PATHWAY: gami01100 Help Entry gami01100                   Pathway                                 Name Metabolic pathways - Gordonia amicalis Class BRITE hierarchy Pathway map gami01100   Metabolic pathways Module gami_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:gami01100] gami_M00002   Glycolysis, core module involving three-carbon compounds [PATH:gami01100] gami_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gami01100] gami_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gami01100] gami_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:gami01100] gami_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gami01100] gami_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gami01100] gami_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:gami01100] gami_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gami01100] gami_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gami01100] gami_M00012   Glyoxylate cycle [PATH:gami01100] gami_M00015   Proline biosynthesis, glutamate => proline [PATH:gami01100] gami_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:gami01100] gami_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:gami01100] gami_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:gami01100] gami_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:gami01100] gami_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:gami01100] gami_M00026   Histidine biosynthesis, PRPP => histidine [PATH:gami01100] gami_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:gami01100] gami_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:gami01100] gami_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:gami01100] gami_M00035   Methionine degradation [PATH:gami01100] gami_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:gami01100] gami_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:gami01100] gami_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:gami01100] gami_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gami01100] gami_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gami01100] gami_M00082   Fatty acid biosynthesis, initiation [PATH:gami01100] gami_M00083   Fatty acid biosynthesis, elongation [PATH:gami01100] gami_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:gami01100] gami_M00087   beta-Oxidation [PATH:gami01100] gami_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:gami01100] gami_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:gami01100] gami_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:gami01100] gami_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:gami01100] gami_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:gami01100] gami_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:gami01100] gami_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:gami01100] gami_M00149   Succinate dehydrogenase, prokaryotes [PATH:gami01100] gami_M00151   Cytochrome bc1 complex respiratory unit [PATH:gami01100] gami_M00155   Cytochrome c oxidase, prokaryotes [PATH:gami01100] gami_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:gami01100] gami_M00168   CAM (Crassulacean acid metabolism), dark [PATH:gami01100] gami_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:gami01100] gami_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gami01100] gami_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:gami01100] gami_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:gami01100] gami_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:gami01100] gami_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:gami01100] gami_M00555   Betaine biosynthesis, choline => betaine [PATH:gami01100] gami_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:gami01100] gami_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:gami01100] gami_M00621   Glycine cleavage system [PATH:gami01100] gami_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:gami01100] gami_M00793   dTDP-L-rhamnose biosynthesis [PATH:gami01100] gami_M00844   Arginine biosynthesis, ornithine => arginine [PATH:gami01100] gami_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:gami01100] gami_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:gami01100] gami_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:gami01100] gami_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:gami01100] gami_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:gami01100] gami_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:gami01100] gami_M00926   Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:gami01100] gami_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:gami01100] gami_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:gami01100] gami_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:gami01100] gami_M00970   Proline degradation, proline => glutamate [PATH:gami01100] gami_M00972   Proline metabolism [PATH:gami01100] Organism Gordonia amicalis [GN:gami] Related pathway gami00010   Glycolysis / Gluconeogenesis gami00020   Citrate cycle (TCA cycle) gami00030   Pentose phosphate pathway gami00040   Pentose and glucuronate interconversions gami00051   Fructose and mannose metabolism gami00052   Galactose metabolism gami00053   Ascorbate and aldarate metabolism gami00061   Fatty acid biosynthesis gami00071   Fatty acid degradation gami00100   Steroid biosynthesis gami00121   Secondary bile acid biosynthesis gami00130   Ubiquinone and other terpenoid-quinone biosynthesis gami00190   Oxidative phosphorylation gami00220   Arginine biosynthesis gami00230   Purine metabolism gami00240   Pyrimidine metabolism gami00250   Alanine, aspartate and glutamate metabolism gami00260   Glycine, serine and threonine metabolism gami00261   Monobactam biosynthesis gami00270   Cysteine and methionine metabolism gami00280   Valine, leucine and isoleucine degradation gami00290   Valine, leucine and isoleucine biosynthesis gami00300   Lysine biosynthesis gami00310   Lysine degradation gami00311   Penicillin and cephalosporin biosynthesis gami00330   Arginine and proline metabolism gami00332   Carbapenem biosynthesis gami00340   Histidine metabolism gami00350   Tyrosine metabolism gami00360   Phenylalanine metabolism gami00361   Chlorocyclohexane and chlorobenzene degradation gami00362   Benzoate degradation gami00364   Fluorobenzoate degradation gami00380   Tryptophan metabolism gami00400   Phenylalanine, tyrosine and tryptophan biosynthesis gami00401   Novobiocin biosynthesis gami00410   beta-Alanine metabolism gami00430   Taurine and hypotaurine metabolism gami00450   Selenocompound metabolism gami00460   Cyanoamino acid metabolism gami00470   D-Amino acid metabolism gami00480   Glutathione metabolism gami00500   Starch and sucrose metabolism gami00514   Other types of O-glycan biosynthesis gami00515   Mannose type O-glycan biosynthesis gami00520   Amino sugar and nucleotide sugar metabolism gami00521   Streptomycin biosynthesis gami00523   Polyketide sugar unit biosynthesis gami00525   Acarbose and validamycin biosynthesis gami00541   O-Antigen nucleotide sugar biosynthesis gami00542   O-Antigen repeat unit biosynthesis gami00543   Exopolysaccharide biosynthesis gami00550   Peptidoglycan biosynthesis gami00552   Teichoic acid biosynthesis gami00561   Glycerolipid metabolism gami00562   Inositol phosphate metabolism gami00564   Glycerophospholipid metabolism gami00592   alpha-Linolenic acid metabolism gami00600   Sphingolipid metabolism gami00620   Pyruvate metabolism gami00621   Dioxin degradation gami00622   Xylene degradation gami00623   Toluene degradation gami00625   Chloroalkane and chloroalkene degradation gami00626   Naphthalene degradation gami00627   Aminobenzoate degradation gami00630   Glyoxylate and dicarboxylate metabolism gami00640   Propanoate metabolism gami00643   Styrene degradation gami00650   Butanoate metabolism gami00660   C5-Branched dibasic acid metabolism gami00670   One carbon pool by folate gami00680   Methane metabolism gami00710   Carbon fixation by Calvin cycle gami00720   Other carbon fixation pathways gami00730   Thiamine metabolism gami00740   Riboflavin metabolism gami00750   Vitamin B6 metabolism gami00760   Nicotinate and nicotinamide metabolism gami00770   Pantothenate and CoA biosynthesis gami00780   Biotin metabolism gami00785   Lipoic acid metabolism gami00790   Folate biosynthesis gami00791   Atrazine degradation gami00860   Porphyrin metabolism gami00900   Terpenoid backbone biosynthesis gami00903   Limonene degradation gami00906   Carotenoid biosynthesis gami00907   Pinene, camphor and geraniol degradation gami00910   Nitrogen metabolism gami00920   Sulfur metabolism gami00930   Caprolactam degradation gami00946   Degradation of flavonoids gami00984   Steroid degradation gami00999   Biosynthesis of various plant secondary metabolites gami01040   Biosynthesis of unsaturated fatty acids gami01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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