KEGG   PATHWAY: gsj03050
Entry
gsj03050                    Pathway                                
Name
Proteasome - Glycine soja (wild soybean)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
gsj03050  Proteasome
gsj03050

Other DBs
GO: 0000502
Organism
Glycine soja (wild soybean) [GN:gsj]
Gene
114408549  probable 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
114414568  probable 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
114394063  probable 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
114385134  probable 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
114416738  probable 26S proteasome regulatory subunit p27 [KO:K06693]
114404363  probable 26S proteasome regulatory subunit p27 isoform X1 [KO:K06693]
114413188  26S proteasome non-ATPase regulatory subunit 12 homolog A [KO:K03035]
114410131  26S proteasome non-ATPase regulatory subunit 12 homolog A-like isoform X1 [KO:K03035]
114415735  26S proteasome non-ATPase regulatory subunit 12 homolog A-like [KO:K03035]
114421934  26S proteasome non-ATPase regulatory subunit 12 homolog A-like [KO:K03035]
114409067  26S proteasome non-ATPase regulatory subunit 11 homolog [KO:K03036]
114415091  26S proteasome non-ATPase regulatory subunit 11 homolog [KO:K03036]
114393395  26S proteasome non-ATPase regulatory subunit 11 homolog [KO:K03036]
114412027  26S proteasome non-ATPase regulatory subunit 6 homolog [KO:K03037]
114412030  26S proteasome non-ATPase regulatory subunit 6 homolog [KO:K03037]
114393925  26S proteasome non-ATPase regulatory subunit 6 homolog [KO:K03037]
114403576  26S proteasome non-ATPase regulatory subunit 7 homolog A-like [KO:K03038]
114397601  26S proteasome non-ATPase regulatory subunit 7 homolog A-like [KO:K03038]
114382605  26S proteasome non-ATPase regulatory subunit 7 homolog A [KO:K03038]
114408057  26S proteasome non-ATPase regulatory subunit 13 homolog A-like [KO:K03039]
114368991  26S proteasome non-ATPase regulatory subunit 13 homolog A [KO:K03039]
114393163  26S proteasome non-ATPase regulatory subunit 14 homolog [KO:K03030]
114376262  26S proteasome non-ATPase regulatory subunit 14 homolog [KO:K03030]
114385081  26S proteasome non-ATPase regulatory subunit 14 homolog [KO:K03030]
114388189  26S proteasome non-ATPase regulatory subunit 14 homolog [KO:K03030]
114412648  26S proteasome non-ATPase regulatory subunit 8 homolog A-like [KO:K03031]
114404926  26S proteasome non-ATPase regulatory subunit 8 homolog A-like [KO:K03031]
114421461  26S proteasome non-ATPase regulatory subunit 8 homolog A-like [KO:K03031]
114416461  protein DSS1 HOMOLOG ON CHROMOSOME V-like [KO:K10881]
114404542  protein DSS1 HOMOLOG ON CHROMOSOME V-like [KO:K10881]
114409816  protein DSS1 HOMOLOG ON CHROMOSOME V-like [KO:K10881]
114419710  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1 [KO:K03029]
114391246  26S proteasome non-ATPase regulatory subunit 4 homolog [KO:K03029]
114381426  26S proteasome non-ATPase regulatory subunit 4 homolog [KO:K03029]
114377109  26S proteasome non-ATPase regulatory subunit 4 homolog [KO:K03029]
114379692  26S proteasome non-ATPase regulatory subunit 2 homolog A-like [KO:K03028]
114417177  26S proteasome non-ATPase regulatory subunit 2 homolog A [KO:K03028]
114413688  26S proteasome non-ATPase regulatory subunit 1 homolog A-like [KO:K03032]
114421241  26S proteasome non-ATPase regulatory subunit 1 homolog A-like [KO:K03032]
114421103  26S proteasome regulatory subunit RPN13-like isoform X1 [KO:K06691]
114413492  26S proteasome regulatory subunit RPN13-like [KO:K06691]
114418231  26S proteasome regulatory subunit 7 [KO:K03061]
114400427  26S proteasome regulatory subunit 7-like isoform X1 [KO:K03061]
114407859  26S proteasome regulatory subunit 7-like [KO:K03061]
114390889  26S proteasome regulatory subunit 7 [KO:K03061]
114406991  26S proteasome regulatory subunit 4 homolog A-like [KO:K03062]
114400038  26S proteasome regulatory subunit 4 homolog A-like [KO:K03062]
114371059  26S proteasome regulatory subunit 4 homolog A [KO:K03062]
114381268  26S proteasome regulatory subunit 4 homolog A-like [KO:K03062]
114417877  26S proteasome regulatory subunit 8 homolog A-like [KO:K03066]
114422544  26S proteasome regulatory subunit 8 homolog A [KO:K03066]
114408622  26S proteasome regulatory subunit 10B homolog A [KO:K03064]
114414633  26S proteasome regulatory subunit 10B homolog A [KO:K03064]
114414045  26S proteasome regulatory subunit 10B homolog A-like [KO:K03064]
114385350  26S proteasome regulatory subunit 10B homolog A-like [KO:K03064]
114392586  26S proteasome regulatory subunit 10B homolog A-like [KO:K03064]
114407581  uncharacterized protein LOC114407581 isoform X1 [KO:K03065]
114403151  26S proteasome regulatory subunit 6A homolog [KO:K03065]
114372184  26S proteasome regulatory subunit 6A homolog [KO:K03065]
114395972  26S proteasome regulatory subunit 6B homolog [KO:K03063]
114376852  26S proteasome regulatory subunit 6B homolog [KO:K03063]
114376853  26S proteasome regulatory subunit 6B homolog [KO:K03063]
114423592  proteasome activator subunit 4-like [KO:K06699]
114395866  proteasome activator subunit 4-like [KO:K06699]
114416935  proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
114380180  proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
114415128  proteasome subunit alpha type-2-A-like [KO:K02726] [EC:3.4.25.1]
114406225  proteasome subunit alpha type-2-A-like [KO:K02726] [EC:3.4.25.1]
114422090  proteasome subunit alpha type-2-A isoform X1 [KO:K02726] [EC:3.4.25.1]
114388270  proteasome subunit alpha type-2-A-like [KO:K02726] [EC:3.4.25.1]
114419121  proteasome subunit alpha type-4-like [KO:K02728] [EC:3.4.25.1]
114397680  proteasome subunit alpha type-4-like [KO:K02728] [EC:3.4.25.1]
114406080  proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
114416434  proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
114390552  proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
114381386  proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
114401447  proteasome subunit alpha type-5-like [KO:K02729] [EC:3.4.25.1]
114372685  proteasome subunit alpha type-5-like [KO:K02729] [EC:3.4.25.1]
114369230  proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
114378541  proteasome subunit alpha type-5-like [KO:K02729] [EC:3.4.25.1]
114384924  proteasome subunit alpha type-1-B-like [KO:K02725] [EC:3.4.25.1]
114393894  proteasome subunit alpha type-1-A-like [KO:K02725] [EC:3.4.25.1]
114368677  proteasome subunit alpha type-1-B-like [KO:K02725] [EC:3.4.25.1]
114412316  proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
114398159  proteasome subunit alpha type-3-like isoform X1 [KO:K02727] [EC:3.4.25.1]
114409060  proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
114415083  proteasome subunit beta type-6-like [KO:K02738] [EC:3.4.25.1]
114403084  proteasome subunit beta type-7-B-like [KO:K02739] [EC:3.4.25.1]
114385514  proteasome subunit beta type-7-B [KO:K02739] [EC:3.4.25.1]
114410417  proteasome subunit beta type-3-A [KO:K02735] [EC:3.4.25.1]
114382941  proteasome subunit beta type-3-A-like [KO:K02735] [EC:3.4.25.1]
114382750  proteasome subunit beta type-3-A-like [KO:K02735] [EC:3.4.25.1]
114401255  proteasome subunit beta type-2-B-like [KO:K02734] [EC:3.4.25.1]
114369919  proteasome subunit beta type-2-B [KO:K02734] [EC:3.4.25.1]
114416225  proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
114409936  proteasome subunit beta type-5-like [KO:K02737] [EC:3.4.25.1]
114423150  proteasome subunit beta type-1-like [KO:K02732] [EC:3.4.25.1]
114394763  proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
114400796  proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
114407676  proteasome subunit beta type-4-like [KO:K02736] [EC:3.4.25.1]
114424932  probable proteasome inhibitor [KO:K06700]
114388592  probable proteasome inhibitor [KO:K06700]
114378046  cyclin-B1-2-like [KO:K11599]
114373110  cyclin-B1-2-like [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
gsj04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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