PATHWAY: iod01100 Help Entry iod01100                    Pathway                                 Name Metabolic pathways - Iodobacter ciconiae Class BRITE hierarchy Pathway map iod01100   Metabolic pathways Module iod_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:iod01100] iod_M00002   Glycolysis, core module involving three-carbon compounds [PATH:iod01100] iod_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:iod01100] iod_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:iod01100] iod_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:iod01100] iod_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:iod01100] iod_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:iod01100] iod_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:iod01100] iod_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:iod01100] iod_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:iod01100] iod_M00012   Glyoxylate cycle [PATH:iod01100] iod_M00015   Proline biosynthesis, glutamate => proline [PATH:iod01100] iod_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:iod01100] iod_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:iod01100] iod_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:iod01100] iod_M00021   Cysteine biosynthesis, serine => cysteine [PATH:iod01100] iod_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:iod01100] iod_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:iod01100] iod_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:iod01100] iod_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:iod01100] iod_M00026   Histidine biosynthesis, PRPP => histidine [PATH:iod01100] iod_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:iod01100] iod_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:iod01100] iod_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:iod01100] iod_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:iod01100] iod_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:iod01100] iod_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:iod01100] iod_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:iod01100] iod_M00063   CMP-KDO biosynthesis [PATH:iod01100] iod_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:iod01100] iod_M00082   Fatty acid biosynthesis, initiation [PATH:iod01100] iod_M00083   Fatty acid biosynthesis, elongation [PATH:iod01100] iod_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:iod01100] iod_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:iod01100] iod_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:iod01100] iod_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:iod01100] iod_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:iod01100] iod_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:iod01100] iod_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:iod01100] iod_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:iod01100] iod_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:iod01100] iod_M00149   Succinate dehydrogenase, prokaryotes [PATH:iod01100] iod_M00150   Fumarate reductase, prokaryotes [PATH:iod01100] iod_M00151   Cytochrome bc1 complex respiratory unit [PATH:iod01100] iod_M00155   Cytochrome c oxidase, prokaryotes [PATH:iod01100] iod_M00156   Cytochrome c oxidase, cbb3-type [PATH:iod01100] iod_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:iod01100] iod_M00168   CAM (Crassulacean acid metabolism), dark [PATH:iod01100] iod_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:iod01100] iod_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:iod01100] iod_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:iod01100] iod_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:iod01100] iod_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:iod01100] iod_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:iod01100] iod_M00621   Glycine cleavage system [PATH:iod01100] iod_M00793   dTDP-L-rhamnose biosynthesis [PATH:iod01100] iod_M00844   Arginine biosynthesis, ornithine => arginine [PATH:iod01100] iod_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:iod01100] iod_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:iod01100] iod_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:iod01100] iod_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:iod01100] iod_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:iod01100] iod_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:iod01100] iod_M00970   Proline degradation, proline => glutamate [PATH:iod01100] Organism Iodobacter ciconiae [GN:iod] Related pathway iod00010   Glycolysis / Gluconeogenesis iod00020   Citrate cycle (TCA cycle) iod00030   Pentose phosphate pathway iod00040   Pentose and glucuronate interconversions iod00051   Fructose and mannose metabolism iod00052   Galactose metabolism iod00053   Ascorbate and aldarate metabolism iod00061   Fatty acid biosynthesis iod00071   Fatty acid degradation iod00130   Ubiquinone and other terpenoid-quinone biosynthesis iod00190   Oxidative phosphorylation iod00220   Arginine biosynthesis iod00230   Purine metabolism iod00240   Pyrimidine metabolism iod00250   Alanine, aspartate and glutamate metabolism iod00260   Glycine, serine and threonine metabolism iod00261   Monobactam biosynthesis iod00270   Cysteine and methionine metabolism iod00280   Valine, leucine and isoleucine degradation iod00290   Valine, leucine and isoleucine biosynthesis iod00300   Lysine biosynthesis iod00310   Lysine degradation iod00330   Arginine and proline metabolism iod00332   Carbapenem biosynthesis iod00340   Histidine metabolism iod00350   Tyrosine metabolism iod00360   Phenylalanine metabolism iod00361   Chlorocyclohexane and chlorobenzene degradation iod00362   Benzoate degradation iod00364   Fluorobenzoate degradation iod00380   Tryptophan metabolism iod00400   Phenylalanine, tyrosine and tryptophan biosynthesis iod00401   Novobiocin biosynthesis iod00405   Phenazine biosynthesis iod00410   beta-Alanine metabolism iod00430   Taurine and hypotaurine metabolism iod00450   Selenocompound metabolism iod00460   Cyanoamino acid metabolism iod00470   D-Amino acid metabolism iod00480   Glutathione metabolism iod00500   Starch and sucrose metabolism iod00511   Other glycan degradation iod00520   Amino sugar and nucleotide sugar metabolism iod00521   Streptomycin biosynthesis iod00523   Polyketide sugar unit biosynthesis iod00525   Acarbose and validamycin biosynthesis iod00540   Lipopolysaccharide biosynthesis iod00541   O-Antigen nucleotide sugar biosynthesis iod00543   Exopolysaccharide biosynthesis iod00550   Peptidoglycan biosynthesis iod00552   Teichoic acid biosynthesis iod00561   Glycerolipid metabolism iod00562   Inositol phosphate metabolism iod00564   Glycerophospholipid metabolism iod00592   alpha-Linolenic acid metabolism iod00600   Sphingolipid metabolism iod00620   Pyruvate metabolism iod00623   Toluene degradation iod00625   Chloroalkane and chloroalkene degradation iod00626   Naphthalene degradation iod00627   Aminobenzoate degradation iod00630   Glyoxylate and dicarboxylate metabolism iod00633   Nitrotoluene degradation iod00640   Propanoate metabolism iod00643   Styrene degradation iod00650   Butanoate metabolism iod00660   C5-Branched dibasic acid metabolism iod00670   One carbon pool by folate iod00680   Methane metabolism iod00710   Carbon fixation by Calvin cycle iod00720   Other carbon fixation pathways iod00730   Thiamine metabolism iod00740   Riboflavin metabolism iod00750   Vitamin B6 metabolism iod00760   Nicotinate and nicotinamide metabolism iod00770   Pantothenate and CoA biosynthesis iod00780   Biotin metabolism iod00785   Lipoic acid metabolism iod00790   Folate biosynthesis iod00860   Porphyrin metabolism iod00900   Terpenoid backbone biosynthesis iod00906   Carotenoid biosynthesis iod00907   Pinene, camphor and geraniol degradation iod00910   Nitrogen metabolism iod00920   Sulfur metabolism iod00946   Degradation of flavonoids iod00999   Biosynthesis of various plant secondary metabolites iod01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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