PATHWAY: lavi01100 Help Entry lavi01100                   Pathway                                 Name Metabolic pathways - Lysobacter avium Class BRITE hierarchy Pathway map lavi01100   Metabolic pathways Module lavi_M00002   Glycolysis, core module involving three-carbon compounds [PATH:lavi01100] lavi_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lavi01100] lavi_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:lavi01100] lavi_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:lavi01100] lavi_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lavi01100] lavi_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lavi01100] lavi_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:lavi01100] lavi_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lavi01100] lavi_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lavi01100] lavi_M00012   Glyoxylate cycle [PATH:lavi01100] lavi_M00015   Proline biosynthesis, glutamate => proline [PATH:lavi01100] lavi_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:lavi01100] lavi_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:lavi01100] lavi_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:lavi01100] lavi_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:lavi01100] lavi_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:lavi01100] lavi_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:lavi01100] lavi_M00026   Histidine biosynthesis, PRPP => histidine [PATH:lavi01100] lavi_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:lavi01100] lavi_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:lavi01100] lavi_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:lavi01100] lavi_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:lavi01100] lavi_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:lavi01100] lavi_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:lavi01100] lavi_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:lavi01100] lavi_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:lavi01100] lavi_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lavi01100] lavi_M00063   CMP-KDO biosynthesis [PATH:lavi01100] lavi_M00082   Fatty acid biosynthesis, initiation [PATH:lavi01100] lavi_M00083   Fatty acid biosynthesis, elongation [PATH:lavi01100] lavi_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:lavi01100] lavi_M00087   beta-Oxidation [PATH:lavi01100] lavi_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:lavi01100] lavi_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:lavi01100] lavi_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:lavi01100] lavi_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:lavi01100] lavi_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:lavi01100] lavi_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:lavi01100] lavi_M00149   Succinate dehydrogenase, prokaryotes [PATH:lavi01100] lavi_M00151   Cytochrome bc1 complex respiratory unit [PATH:lavi01100] lavi_M00155   Cytochrome c oxidase, prokaryotes [PATH:lavi01100] lavi_M00156   Cytochrome c oxidase, cbb3-type [PATH:lavi01100] lavi_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:lavi01100] lavi_M00168   CAM (Crassulacean acid metabolism), dark [PATH:lavi01100] lavi_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lavi01100] lavi_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:lavi01100] lavi_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:lavi01100] lavi_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:lavi01100] lavi_M00621   Glycine cleavage system [PATH:lavi01100] lavi_M00793   dTDP-L-rhamnose biosynthesis [PATH:lavi01100] lavi_M00845   Arginine biosynthesis, glutamate => acetylcitrulline => arginine [PATH:lavi01100] lavi_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:lavi01100] lavi_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:lavi01100] lavi_M00970   Proline degradation, proline => glutamate [PATH:lavi01100] Organism Lysobacter avium [GN:lavi] Related pathway lavi00010   Glycolysis / Gluconeogenesis lavi00020   Citrate cycle (TCA cycle) lavi00030   Pentose phosphate pathway lavi00040   Pentose and glucuronate interconversions lavi00051   Fructose and mannose metabolism lavi00052   Galactose metabolism lavi00053   Ascorbate and aldarate metabolism lavi00061   Fatty acid biosynthesis lavi00071   Fatty acid degradation lavi00130   Ubiquinone and other terpenoid-quinone biosynthesis lavi00190   Oxidative phosphorylation lavi00220   Arginine biosynthesis lavi00230   Purine metabolism lavi00240   Pyrimidine metabolism lavi00250   Alanine, aspartate and glutamate metabolism lavi00260   Glycine, serine and threonine metabolism lavi00261   Monobactam biosynthesis lavi00270   Cysteine and methionine metabolism lavi00280   Valine, leucine and isoleucine degradation lavi00290   Valine, leucine and isoleucine biosynthesis lavi00300   Lysine biosynthesis lavi00310   Lysine degradation lavi00330   Arginine and proline metabolism lavi00332   Carbapenem biosynthesis lavi00340   Histidine metabolism lavi00350   Tyrosine metabolism lavi00360   Phenylalanine metabolism lavi00361   Chlorocyclohexane and chlorobenzene degradation lavi00362   Benzoate degradation lavi00364   Fluorobenzoate degradation lavi00380   Tryptophan metabolism lavi00400   Phenylalanine, tyrosine and tryptophan biosynthesis lavi00401   Novobiocin biosynthesis lavi00410   beta-Alanine metabolism lavi00430   Taurine and hypotaurine metabolism lavi00450   Selenocompound metabolism lavi00460   Cyanoamino acid metabolism lavi00470   D-Amino acid metabolism lavi00480   Glutathione metabolism lavi00500   Starch and sucrose metabolism lavi00520   Amino sugar and nucleotide sugar metabolism lavi00521   Streptomycin biosynthesis lavi00523   Polyketide sugar unit biosynthesis lavi00525   Acarbose and validamycin biosynthesis lavi00540   Lipopolysaccharide biosynthesis lavi00541   O-Antigen nucleotide sugar biosynthesis lavi00550   Peptidoglycan biosynthesis lavi00552   Teichoic acid biosynthesis lavi00561   Glycerolipid metabolism lavi00562   Inositol phosphate metabolism lavi00564   Glycerophospholipid metabolism lavi00565   Ether lipid metabolism lavi00592   alpha-Linolenic acid metabolism lavi00620   Pyruvate metabolism lavi00623   Toluene degradation lavi00625   Chloroalkane and chloroalkene degradation lavi00626   Naphthalene degradation lavi00630   Glyoxylate and dicarboxylate metabolism lavi00640   Propanoate metabolism lavi00643   Styrene degradation lavi00650   Butanoate metabolism lavi00660   C5-Branched dibasic acid metabolism lavi00670   One carbon pool by folate lavi00680   Methane metabolism lavi00710   Carbon fixation by Calvin cycle lavi00720   Other carbon fixation pathways lavi00730   Thiamine metabolism lavi00740   Riboflavin metabolism lavi00750   Vitamin B6 metabolism lavi00760   Nicotinate and nicotinamide metabolism lavi00770   Pantothenate and CoA biosynthesis lavi00780   Biotin metabolism lavi00785   Lipoic acid metabolism lavi00790   Folate biosynthesis lavi00860   Porphyrin metabolism lavi00900   Terpenoid backbone biosynthesis lavi00907   Pinene, camphor and geraniol degradation lavi00910   Nitrogen metabolism lavi00920   Sulfur metabolism lavi00930   Caprolactam degradation lavi00999   Biosynthesis of various plant secondary metabolites lavi01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

DBGET integrated database retrieval system