KEGG   PATHWAY: lgy01100
Entry
lgy01100                    Pathway                                
Name
Metabolic pathways - Lysinibacillus varians
Class
Pathway map
lgy01100  Metabolic pathways
lgy01100

Module
lgy_M00002  Glycolysis, core module involving three-carbon compounds [PATH:lgy01100]
lgy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lgy01100]
lgy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lgy01100]
lgy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lgy01100]
lgy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lgy01100]
lgy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lgy01100]
lgy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lgy01100]
lgy_M00012  Glyoxylate cycle [PATH:lgy01100]
lgy_M00015  Proline biosynthesis, glutamate => proline [PATH:lgy01100]
lgy_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:lgy01100]
lgy_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:lgy01100]
lgy_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:lgy01100]
lgy_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:lgy01100]
lgy_M00021  Cysteine biosynthesis, serine => cysteine [PATH:lgy01100]
lgy_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:lgy01100]
lgy_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:lgy01100]
lgy_M00026  Histidine biosynthesis, PRPP => histidine [PATH:lgy01100]
lgy_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:lgy01100]
lgy_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:lgy01100]
lgy_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:lgy01100]
lgy_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:lgy01100]
lgy_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:lgy01100]
lgy_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:lgy01100]
lgy_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:lgy01100]
lgy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lgy01100]
lgy_M00082  Fatty acid biosynthesis, initiation [PATH:lgy01100]
lgy_M00083  Fatty acid biosynthesis, elongation [PATH:lgy01100]
lgy_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:lgy01100]
lgy_M00087  beta-Oxidation [PATH:lgy01100]
lgy_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:lgy01100]
lgy_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:lgy01100]
lgy_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:lgy01100]
lgy_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:lgy01100]
lgy_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:lgy01100]
lgy_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:lgy01100]
lgy_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:lgy01100]
lgy_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:lgy01100]
lgy_M00140  C1-unit interconversion, prokaryotes [PATH:lgy01100]
lgy_M00149  Succinate dehydrogenase, prokaryotes [PATH:lgy01100]
lgy_M00151  Cytochrome bc1 complex respiratory unit [PATH:lgy01100]
lgy_M00155  Cytochrome c oxidase, prokaryotes [PATH:lgy01100]
lgy_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:lgy01100]
lgy_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:lgy01100]
lgy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lgy01100]
lgy_M00416  Cytochrome aa3-600 menaquinol oxidase [PATH:lgy01100]
lgy_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:lgy01100]
lgy_M00526  Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:lgy01100]
lgy_M00569  Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:lgy01100]
lgy_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:lgy01100]
lgy_M00577  Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:lgy01100]
lgy_M00621  Glycine cleavage system [PATH:lgy01100]
lgy_M00844  Arginine biosynthesis, ornithine => arginine [PATH:lgy01100]
lgy_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:lgy01100]
lgy_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:lgy01100]
lgy_M00883  Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:lgy01100]
lgy_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:lgy01100]
lgy_M00916  Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:lgy01100]
lgy_M00924  Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:lgy01100]
lgy_M00926  Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:lgy01100]
lgy_M00970  Proline degradation, proline => glutamate [PATH:lgy01100]
lgy_M00972  Proline metabolism [PATH:lgy01100]
Organism
Lysinibacillus varians [GN:lgy]
Related
pathway
lgy00010  Glycolysis / Gluconeogenesis
lgy00020  Citrate cycle (TCA cycle)
lgy00030  Pentose phosphate pathway
lgy00040  Pentose and glucuronate interconversions
lgy00051  Fructose and mannose metabolism
lgy00052  Galactose metabolism
lgy00053  Ascorbate and aldarate metabolism
lgy00061  Fatty acid biosynthesis
lgy00062  Fatty acid elongation
lgy00071  Fatty acid degradation
lgy00100  Steroid biosynthesis
lgy00130  Ubiquinone and other terpenoid-quinone biosynthesis
lgy00190  Oxidative phosphorylation
lgy00220  Arginine biosynthesis
lgy00230  Purine metabolism
lgy00240  Pyrimidine metabolism
lgy00250  Alanine, aspartate and glutamate metabolism
lgy00260  Glycine, serine and threonine metabolism
lgy00261  Monobactam biosynthesis
lgy00270  Cysteine and methionine metabolism
lgy00280  Valine, leucine and isoleucine degradation
lgy00290  Valine, leucine and isoleucine biosynthesis
lgy00300  Lysine biosynthesis
lgy00310  Lysine degradation
lgy00311  Penicillin and cephalosporin biosynthesis
lgy00330  Arginine and proline metabolism
lgy00332  Carbapenem biosynthesis
lgy00333  Prodigiosin biosynthesis
lgy00340  Histidine metabolism
lgy00350  Tyrosine metabolism
lgy00360  Phenylalanine metabolism
lgy00361  Chlorocyclohexane and chlorobenzene degradation
lgy00362  Benzoate degradation
lgy00380  Tryptophan metabolism
lgy00400  Phenylalanine, tyrosine and tryptophan biosynthesis
lgy00401  Novobiocin biosynthesis
lgy00410  beta-Alanine metabolism
lgy00430  Taurine and hypotaurine metabolism
lgy00440  Phosphonate and phosphinate metabolism
lgy00450  Selenocompound metabolism
lgy00460  Cyanoamino acid metabolism
lgy00470  D-Amino acid metabolism
lgy00480  Glutathione metabolism
lgy00500  Starch and sucrose metabolism
lgy00520  Amino sugar and nucleotide sugar metabolism
lgy00521  Streptomycin biosynthesis
lgy00540  Lipopolysaccharide biosynthesis
lgy00541  O-Antigen nucleotide sugar biosynthesis
lgy00542  O-Antigen repeat unit biosynthesis
lgy00543  Exopolysaccharide biosynthesis
lgy00550  Peptidoglycan biosynthesis
lgy00552  Teichoic acid biosynthesis
lgy00561  Glycerolipid metabolism
lgy00562  Inositol phosphate metabolism
lgy00564  Glycerophospholipid metabolism
lgy00592  alpha-Linolenic acid metabolism
lgy00620  Pyruvate metabolism
lgy00621  Dioxin degradation
lgy00622  Xylene degradation
lgy00625  Chloroalkane and chloroalkene degradation
lgy00626  Naphthalene degradation
lgy00627  Aminobenzoate degradation
lgy00630  Glyoxylate and dicarboxylate metabolism
lgy00640  Propanoate metabolism
lgy00643  Styrene degradation
lgy00650  Butanoate metabolism
lgy00660  C5-Branched dibasic acid metabolism
lgy00670  One carbon pool by folate
lgy00680  Methane metabolism
lgy00710  Carbon fixation by Calvin cycle
lgy00720  Other carbon fixation pathways
lgy00730  Thiamine metabolism
lgy00740  Riboflavin metabolism
lgy00750  Vitamin B6 metabolism
lgy00760  Nicotinate and nicotinamide metabolism
lgy00770  Pantothenate and CoA biosynthesis
lgy00780  Biotin metabolism
lgy00785  Lipoic acid metabolism
lgy00790  Folate biosynthesis
lgy00860  Porphyrin metabolism
lgy00900  Terpenoid backbone biosynthesis
lgy00906  Carotenoid biosynthesis
lgy00907  Pinene, camphor and geraniol degradation
lgy00909  Sesquiterpenoid and triterpenoid biosynthesis
lgy00910  Nitrogen metabolism
lgy00920  Sulfur metabolism
lgy00997  Biosynthesis of various other secondary metabolites
lgy00999  Biosynthesis of various plant secondary metabolites
KO pathway
ko01100   
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