PATHWAY: liu01100 Help Entry liu01100                    Pathway                                 Name Metabolic pathways - Lysinibacillus irui Class BRITE hierarchy Pathway map liu01100   Metabolic pathways Module liu_M00002   Glycolysis, core module involving three-carbon compounds [PATH:liu01100] liu_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:liu01100] liu_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:liu01100] liu_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:liu01100] liu_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:liu01100] liu_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:liu01100] liu_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:liu01100] liu_M00012   Glyoxylate cycle [PATH:liu01100] liu_M00015   Proline biosynthesis, glutamate => proline [PATH:liu01100] liu_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:liu01100] liu_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:liu01100] liu_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:liu01100] liu_M00021   Cysteine biosynthesis, serine => cysteine [PATH:liu01100] liu_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:liu01100] liu_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:liu01100] liu_M00026   Histidine biosynthesis, PRPP => histidine [PATH:liu01100] liu_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:liu01100] liu_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:liu01100] liu_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:liu01100] liu_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:liu01100] liu_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:liu01100] liu_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:liu01100] liu_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:liu01100] liu_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:liu01100] liu_M00082   Fatty acid biosynthesis, initiation [PATH:liu01100] liu_M00083   Fatty acid biosynthesis, elongation [PATH:liu01100] liu_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:liu01100] liu_M00087   beta-Oxidation [PATH:liu01100] liu_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:liu01100] liu_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:liu01100] liu_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:liu01100] liu_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:liu01100] liu_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:liu01100] liu_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:liu01100] liu_M00140   C1-unit interconversion, prokaryotes [PATH:liu01100] liu_M00151   Cytochrome bc1 complex respiratory unit [PATH:liu01100] liu_M00155   Cytochrome c oxidase, prokaryotes [PATH:liu01100] liu_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:liu01100] liu_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:liu01100] liu_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:liu01100] liu_M00416   Cytochrome aa3-600 menaquinol oxidase [PATH:liu01100] liu_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:liu01100] liu_M00526   Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:liu01100] liu_M00527   Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:liu01100] liu_M00621   Glycine cleavage system [PATH:liu01100] liu_M00844   Arginine biosynthesis, ornithine => arginine [PATH:liu01100] liu_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:liu01100] liu_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:liu01100] liu_M00883   Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:liu01100] liu_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:liu01100] liu_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:liu01100] liu_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:liu01100] liu_M00926   Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:liu01100] liu_M00970   Proline degradation, proline => glutamate [PATH:liu01100] liu_M00972   Proline metabolism [PATH:liu01100] Organism Lysinibacillus irui [GN:liu] Related pathway liu00010   Glycolysis / Gluconeogenesis liu00020   Citrate cycle (TCA cycle) liu00030   Pentose phosphate pathway liu00040   Pentose and glucuronate interconversions liu00051   Fructose and mannose metabolism liu00052   Galactose metabolism liu00053   Ascorbate and aldarate metabolism liu00061   Fatty acid biosynthesis liu00062   Fatty acid elongation liu00071   Fatty acid degradation liu00074   Mycolic acid biosynthesis liu00100   Steroid biosynthesis liu00130   Ubiquinone and other terpenoid-quinone biosynthesis liu00190   Oxidative phosphorylation liu00220   Arginine biosynthesis liu00230   Purine metabolism liu00240   Pyrimidine metabolism liu00250   Alanine, aspartate and glutamate metabolism liu00260   Glycine, serine and threonine metabolism liu00261   Monobactam biosynthesis liu00270   Cysteine and methionine metabolism liu00280   Valine, leucine and isoleucine degradation liu00290   Valine, leucine and isoleucine biosynthesis liu00300   Lysine biosynthesis liu00310   Lysine degradation liu00311   Penicillin and cephalosporin biosynthesis liu00330   Arginine and proline metabolism liu00332   Carbapenem biosynthesis liu00340   Histidine metabolism liu00350   Tyrosine metabolism liu00360   Phenylalanine metabolism liu00361   Chlorocyclohexane and chlorobenzene degradation liu00362   Benzoate degradation liu00380   Tryptophan metabolism liu00400   Phenylalanine, tyrosine and tryptophan biosynthesis liu00401   Novobiocin biosynthesis liu00410   beta-Alanine metabolism liu00430   Taurine and hypotaurine metabolism liu00440   Phosphonate and phosphinate metabolism liu00450   Selenocompound metabolism liu00460   Cyanoamino acid metabolism liu00470   D-Amino acid metabolism liu00480   Glutathione metabolism liu00500   Starch and sucrose metabolism liu00520   Amino sugar and nucleotide sugar metabolism liu00521   Streptomycin biosynthesis liu00523   Polyketide sugar unit biosynthesis liu00525   Acarbose and validamycin biosynthesis liu00540   Lipopolysaccharide biosynthesis liu00541   O-Antigen nucleotide sugar biosynthesis liu00542   O-Antigen repeat unit biosynthesis liu00543   Exopolysaccharide biosynthesis liu00550   Peptidoglycan biosynthesis liu00552   Teichoic acid biosynthesis liu00561   Glycerolipid metabolism liu00562   Inositol phosphate metabolism liu00564   Glycerophospholipid metabolism liu00592   alpha-Linolenic acid metabolism liu00620   Pyruvate metabolism liu00622   Xylene degradation liu00625   Chloroalkane and chloroalkene degradation liu00626   Naphthalene degradation liu00627   Aminobenzoate degradation liu00630   Glyoxylate and dicarboxylate metabolism liu00640   Propanoate metabolism liu00643   Styrene degradation liu00650   Butanoate metabolism liu00660   C5-Branched dibasic acid metabolism liu00670   One carbon pool by folate liu00680   Methane metabolism liu00710   Carbon fixation by Calvin cycle liu00720   Other carbon fixation pathways liu00730   Thiamine metabolism liu00740   Riboflavin metabolism liu00750   Vitamin B6 metabolism liu00760   Nicotinate and nicotinamide metabolism liu00770   Pantothenate and CoA biosynthesis liu00780   Biotin metabolism liu00785   Lipoic acid metabolism liu00790   Folate biosynthesis liu00860   Porphyrin metabolism liu00900   Terpenoid backbone biosynthesis liu00907   Pinene, camphor and geraniol degradation liu00909   Sesquiterpenoid and triterpenoid biosynthesis liu00910   Nitrogen metabolism liu00920   Sulfur metabolism liu00999   Biosynthesis of various plant secondary metabolites KO pathway ko01100     LinkDB All DBs

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