PATHWAY: lyj01100 Help Entry lyj01100                    Pathway                                 Name Metabolic pathways - Lysobacter alkalisoli Class BRITE hierarchy Pathway map lyj01100   Metabolic pathways Module lyj_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:lyj01100] lyj_M00002   Glycolysis, core module involving three-carbon compounds [PATH:lyj01100] lyj_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lyj01100] lyj_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:lyj01100] lyj_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lyj01100] lyj_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:lyj01100] lyj_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:lyj01100] lyj_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lyj01100] lyj_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lyj01100] lyj_M00012   Glyoxylate cycle [PATH:lyj01100] lyj_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:lyj01100] lyj_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:lyj01100] lyj_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:lyj01100] lyj_M00021   Cysteine biosynthesis, serine => cysteine [PATH:lyj01100] lyj_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:lyj01100] lyj_M00026   Histidine biosynthesis, PRPP => histidine [PATH:lyj01100] lyj_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:lyj01100] lyj_M00035   Methionine degradation [PATH:lyj01100] lyj_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:lyj01100] lyj_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:lyj01100] lyj_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:lyj01100] lyj_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:lyj01100] lyj_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:lyj01100] lyj_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:lyj01100] lyj_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lyj01100] lyj_M00063   CMP-KDO biosynthesis [PATH:lyj01100] lyj_M00082   Fatty acid biosynthesis, initiation [PATH:lyj01100] lyj_M00083   Fatty acid biosynthesis, elongation [PATH:lyj01100] lyj_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:lyj01100] lyj_M00087   beta-Oxidation [PATH:lyj01100] lyj_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:lyj01100] lyj_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:lyj01100] lyj_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:lyj01100] lyj_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:lyj01100] lyj_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:lyj01100] lyj_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:lyj01100] lyj_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:lyj01100] lyj_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:lyj01100] lyj_M00149   Succinate dehydrogenase, prokaryotes [PATH:lyj01100] lyj_M00151   Cytochrome bc1 complex respiratory unit [PATH:lyj01100] lyj_M00155   Cytochrome c oxidase, prokaryotes [PATH:lyj01100] lyj_M00156   Cytochrome c oxidase, cbb3-type [PATH:lyj01100] lyj_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:lyj01100] lyj_M00168   CAM (Crassulacean acid metabolism), dark [PATH:lyj01100] lyj_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:lyj01100] lyj_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lyj01100] lyj_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:lyj01100] lyj_M00417   Cytochrome o ubiquinol oxidase [PATH:lyj01100] lyj_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:lyj01100] lyj_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:lyj01100] lyj_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:lyj01100] lyj_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:lyj01100] lyj_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:lyj01100] lyj_M00621   Glycine cleavage system [PATH:lyj01100] lyj_M00793   dTDP-L-rhamnose biosynthesis [PATH:lyj01100] lyj_M00845   Arginine biosynthesis, glutamate => acetylcitrulline => arginine [PATH:lyj01100] lyj_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:lyj01100] lyj_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:lyj01100] lyj_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:lyj01100] lyj_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:lyj01100] lyj_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:lyj01100] lyj_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:lyj01100] Organism Lysobacter alkalisoli [GN:lyj] Related pathway lyj00010   Glycolysis / Gluconeogenesis lyj00020   Citrate cycle (TCA cycle) lyj00030   Pentose phosphate pathway lyj00040   Pentose and glucuronate interconversions lyj00051   Fructose and mannose metabolism lyj00052   Galactose metabolism lyj00053   Ascorbate and aldarate metabolism lyj00061   Fatty acid biosynthesis lyj00071   Fatty acid degradation lyj00100   Steroid biosynthesis lyj00130   Ubiquinone and other terpenoid-quinone biosynthesis lyj00190   Oxidative phosphorylation lyj00220   Arginine biosynthesis lyj00230   Purine metabolism lyj00240   Pyrimidine metabolism lyj00250   Alanine, aspartate and glutamate metabolism lyj00260   Glycine, serine and threonine metabolism lyj00261   Monobactam biosynthesis lyj00270   Cysteine and methionine metabolism lyj00280   Valine, leucine and isoleucine degradation lyj00290   Valine, leucine and isoleucine biosynthesis lyj00300   Lysine biosynthesis lyj00310   Lysine degradation lyj00311   Penicillin and cephalosporin biosynthesis lyj00330   Arginine and proline metabolism lyj00340   Histidine metabolism lyj00350   Tyrosine metabolism lyj00360   Phenylalanine metabolism lyj00361   Chlorocyclohexane and chlorobenzene degradation lyj00362   Benzoate degradation lyj00364   Fluorobenzoate degradation lyj00380   Tryptophan metabolism lyj00400   Phenylalanine, tyrosine and tryptophan biosynthesis lyj00401   Novobiocin biosynthesis lyj00410   beta-Alanine metabolism lyj00430   Taurine and hypotaurine metabolism lyj00450   Selenocompound metabolism lyj00460   Cyanoamino acid metabolism lyj00470   D-Amino acid metabolism lyj00480   Glutathione metabolism lyj00500   Starch and sucrose metabolism lyj00511   Other glycan degradation lyj00520   Amino sugar and nucleotide sugar metabolism lyj00521   Streptomycin biosynthesis lyj00523   Polyketide sugar unit biosynthesis lyj00525   Acarbose and validamycin biosynthesis lyj00540   Lipopolysaccharide biosynthesis lyj00541   O-Antigen nucleotide sugar biosynthesis lyj00543   Exopolysaccharide biosynthesis lyj00550   Peptidoglycan biosynthesis lyj00552   Teichoic acid biosynthesis lyj00561   Glycerolipid metabolism lyj00562   Inositol phosphate metabolism lyj00564   Glycerophospholipid metabolism lyj00565   Ether lipid metabolism lyj00590   Arachidonic acid metabolism lyj00592   alpha-Linolenic acid metabolism lyj00600   Sphingolipid metabolism lyj00620   Pyruvate metabolism lyj00621   Dioxin degradation lyj00622   Xylene degradation lyj00623   Toluene degradation lyj00625   Chloroalkane and chloroalkene degradation lyj00626   Naphthalene degradation lyj00630   Glyoxylate and dicarboxylate metabolism lyj00640   Propanoate metabolism lyj00643   Styrene degradation lyj00650   Butanoate metabolism lyj00660   C5-Branched dibasic acid metabolism lyj00670   One carbon pool by folate lyj00680   Methane metabolism lyj00710   Carbon fixation by Calvin cycle lyj00720   Other carbon fixation pathways lyj00730   Thiamine metabolism lyj00740   Riboflavin metabolism lyj00750   Vitamin B6 metabolism lyj00760   Nicotinate and nicotinamide metabolism lyj00770   Pantothenate and CoA biosynthesis lyj00780   Biotin metabolism lyj00785   Lipoic acid metabolism lyj00790   Folate biosynthesis lyj00860   Porphyrin metabolism lyj00900   Terpenoid backbone biosynthesis lyj00907   Pinene, camphor and geraniol degradation lyj00910   Nitrogen metabolism lyj00920   Sulfur metabolism lyj00930   Caprolactam degradation lyj00946   Degradation of flavonoids lyj00999   Biosynthesis of various plant secondary metabolites lyj01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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