KEGG   PATHWAY: mbe04139
Entry
mbe04139                    Pathway                                
Name
Mitophagy - yeast - Drepanopeziza brunnea
Description
Mitophagy, which refers to the selective elimination of impaired or excessive mitochondria, is considered to be the main mechanism for mitochondria quality and quantity control. In yeast, oxidative stress or inhibition of TOR induces expression of Agt32, the indispensable mitochondrial outer membrane receptor. Direct phosphorylation of Atg32 by CK2 triggers mitophagy, and two mitogen-activated protein kinase (MAPK) signal transduction pathways are also important in this process. Atg11 is an adaptor protein for selective autophagy, and recruits the cargo to the phagophore assembly site (PAS), where the autophagosome is generated. Then Atg32-Atg8 interaction enhances the formation of the autophagosome surrounding the mitochondria, which finally fuses with vacuoles for degradation. Atg32-Atg11 interaction may also be regulated by Yme1-mediated processing of Atg32, as well as by mitochondrial fission machinery. Some factors have been suggested to positively or negatively regulate the mitophagy via different mechanisms, including Atg1, Atg33, Mss4, Fmc1, Mdm38, Mip1, and Ubp3-Bre5 deubiquitination complex.
Class
Cellular Processes; Transport and catabolism
Pathway map
mbe04139  Mitophagy - yeast
mbe04139

Other DBs
GO: 0000422
Organism
Drepanopeziza brunnea [GN:mbe]
Gene
MBM_05946  FAT domain-containing protein [KO:K07203] [EC:2.7.11.1]
MBM_01137  LSM domain-containing protein [KO:K11088]
MBM_03437  hypothetical protein [KO:K11644]
MBM_01496  intermembrane space AAA protease IAP-1 [KO:K08955] [EC:3.4.24.-]
MBM_06786  WSC domain containing protein [KO:K11244]
MBM_05229  putative Cell wall integrity and stress response component 4 [KO:K11244]
MBM_00835  protein kinase C [KO:K02677] [EC:2.7.11.13]
MBM_03743  map kinase kinase [KO:K08294] [EC:2.7.12.2]
MBM_07936  TmkB [KO:K04464] [EC:2.7.11.24]
MBM_09972  hsp90-like protein [KO:K11231] [EC:2.7.13.3]
MBM_07590  response regulator receiver domain-containing protein [KO:K11233]
MBM_09623  putative MAP kinase kinase (Pbs2) [KO:K11227] [EC:2.7.12.2]
MBM_02950  mitogen-activated protein kinase sty1 [KO:K04441] [EC:2.7.11.24]
MBM_03852  casein kinase II [KO:K03097] [EC:2.7.11.1]
MBM_05941  casein kinase II regulatory subunit [KO:K03115]
MBM_09783  casein kinase II beta subunit [KO:K03115]
MBM_04350  dynamin central region [KO:K17065] [EC:3.6.5.5]
MBM_05759  Autophagy-related protein 11 [KO:K08330]
MBM_00302  hypothetical protein [KO:K17775]
MBM_02834  mdm10-like protein [KO:K17774]
MBM_03535  phosphatidylinositol-4-phosphate 5-kinase fab1 [KO:K17765]
MBM_03772  hypothetical protein [KO:K17764]
MBM_02287  putative Autophagy-related protein 8 [KO:K08341]
MBM_07709  hypothetical protein [KO:K08269] [EC:2.7.11.1]
MBM_09950  CtnG [KO:K19717]
MBM_04352  phosphatase 2c [KO:K19708] [EC:3.1.3.16 3.1.3.43]
MBM_02972  phosphatidylinositol-4-phosphate 5-Kinase [KO:K00889] [EC:2.7.1.68]
MBM_05276  Ras guanyl-nucleotide exchange factor [KO:K18191]
MBM_01892  DNA polymerase family A [KO:K02332] [EC:2.7.7.7]
MBM_03881  MRS7 family protein [KO:K17800]
MBM_00043  putative ubiquitin carboxyl-terminal hydrolase 10 [KO:K11841] [EC:3.4.19.12]
Compound
D00753  Sirolimus (JAN/USAN/INN)
Reference
  Authors
Kanki T, Furukawa K, Yamashita S
  Title
Mitophagy in yeast: Molecular mechanisms and physiological role.
  Journal
Biochim Biophys Acta 1853:2756-65 (2015)
DOI:10.1016/j.bbamcr.2015.01.005
Reference
  Authors
Muller M, Lu K, Reichert AS
  Title
Mitophagy and mitochondrial dynamics in Saccharomyces cerevisiae.
  Journal
Biochim Biophys Acta 1853:2766-74 (2015)
DOI:10.1016/j.bbamcr.2015.02.024
Reference
  Authors
Okamoto K, Kondo-Okamoto N, Ohsumi Y
  Title
Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy.
  Journal
Dev Cell 17:87-97 (2009)
DOI:10.1016/j.devcel.2009.06.013
Reference
  Authors
Kanki T, Wang K, Cao Y, Baba M, Klionsky DJ
  Title
Atg32 is a mitochondrial protein that confers selectivity during mitophagy.
  Journal
Dev Cell 17:98-109 (2009)
DOI:10.1016/j.devcel.2009.06.014
Reference
  Authors
Mao K, Wang K, Zhao M, Xu T, Klionsky DJ
  Title
Two MAPK-signaling pathways are required for mitophagy in Saccharomyces cerevisiae.
  Journal
J Cell Biol 193:755-67 (2011)
DOI:10.1083/jcb.201102092
Reference
  Authors
Aoki Y, Kanki T, Hirota Y, Kurihara Y, Saigusa T, Uchiumi T, Kang D
  Title
Phosphorylation of Serine 114 on Atg32 mediates mitophagy.
  Journal
Mol Biol Cell 22:3206-17 (2011)
DOI:10.1091/mbc.E11-02-0145
Reference
  Authors
Kanki T, Kurihara Y, Jin X, Goda T, Ono Y, Aihara M, Hirota Y, Saigusa T, Aoki Y, Uchiumi T, Kang D
  Title
Casein kinase 2 is essential for mitophagy.
  Journal
EMBO Rep 14:788-94 (2013)
DOI:10.1038/embor.2013.114
Reference
  Authors
Kondo-Okamoto N, Noda NN, Suzuki SW, Nakatogawa H, Takahashi I, Matsunami M, Hashimoto A, Inagaki F, Ohsumi Y, Okamoto K
  Title
Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy.
  Journal
J Biol Chem 287:10631-8 (2012)
DOI:10.1074/jbc.M111.299917
Reference
  Authors
Mao K, Wang K, Liu X, Klionsky DJ
  Title
The scaffold protein Atg11 recruits fission machinery to drive selective mitochondria degradation by autophagy.
  Journal
Dev Cell 26:9-18 (2013)
DOI:10.1016/j.devcel.2013.05.024
Reference
  Authors
Wang K, Jin M, Liu X, Klionsky DJ
  Title
Proteolytic processing of Atg32 by the mitochondrial i-AAA protease Yme1 regulates mitophagy.
  Journal
Autophagy 9:1828-36 (2013)
DOI:10.4161/auto.26281
Reference
  Authors
Tal R, Winter G, Ecker N, Klionsky DJ, Abeliovich H
  Title
Aup1p, a yeast mitochondrial protein phosphatase homolog, is required for efficient stationary phase mitophagy and cell survival.
  Journal
J Biol Chem 282:5617-24 (2007)
DOI:10.1074/jbc.M605940200
Reference
  Authors
Kanki T, Wang K, Baba M, Bartholomew CR, Lynch-Day MA, Du Z, Geng J, Mao K, Yang Z, Yen WL, Klionsky DJ
  Title
A genomic screen for yeast mutants defective in selective mitochondria autophagy.
  Journal
Mol Biol Cell 20:4730-8 (2009)
DOI:10.1091/mbc.E09-03-0225
Reference
  Authors
Wang K, Yang Z, Liu X, Mao K, Nair U, Klionsky DJ
  Title
Phosphatidylinositol 4-kinases are required for autophagic membrane trafficking.
  Journal
J Biol Chem 287:37964-72 (2012)
DOI:10.1074/jbc.M112.371591
Reference
  Authors
Priault M, Salin B, Schaeffer J, Vallette FM, di Rago JP, Martinou JC
  Title
Impairing the bioenergetic status and the biogenesis of mitochondria triggers mitophagy in yeast.
  Journal
Cell Death Differ 12:1613-21 (2005)
DOI:10.1038/sj.cdd.4401697
Reference
  Authors
Nowikovsky K, Reipert S, Devenish RJ, Schweyen RJ
  Title
Mdm38 protein depletion causes loss of mitochondrial K+/H+ exchange activity, osmotic swelling and mitophagy.
  Journal
Cell Death Differ 14:1647-56 (2007)
DOI:10.1038/sj.cdd.4402167
Reference
  Authors
Zhang Y, Qi H, Taylor R, Xu W, Liu LF, Jin S
  Title
The role of autophagy in mitochondria maintenance: characterization of mitochondrial functions in autophagy-deficient S. cerevisiae strains.
  Journal
Autophagy 3:337-46 (2007)
DOI:10.4161/auto.4127
Reference
  Authors
Muller M, Kotter P, Behrendt C, Walter E, Scheckhuber CQ, Entian KD, Reichert AS
  Title
Synthetic quantitative array technology identifies the Ubp3-Bre5 deubiquitinase complex as a negative regulator of mitophagy.
  Journal
Cell Rep 10:1215-25 (2015)
DOI:10.1016/j.celrep.2015.01.044
Related
pathway
mbe04011  MAPK signaling pathway - yeast
mbe04138  Autophagy - yeast
KO pathway
ko04139   
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