PATHWAY: msim01100 Help Entry msim01100                   Pathway                                 Name Metabolic pathways - Mycobacterium simiae Class BRITE hierarchy Pathway map msim01100   Metabolic pathways Module msim_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:msim01100] msim_M00002   Glycolysis, core module involving three-carbon compounds [PATH:msim01100] msim_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:msim01100] msim_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:msim01100] msim_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:msim01100] msim_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:msim01100] msim_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:msim01100] msim_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:msim01100] msim_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msim01100] msim_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msim01100] msim_M00012   Glyoxylate cycle [PATH:msim01100] msim_M00015   Proline biosynthesis, glutamate => proline [PATH:msim01100] msim_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:msim01100] msim_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:msim01100] msim_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:msim01100] msim_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:msim01100] msim_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:msim01100] msim_M00021   Cysteine biosynthesis, serine => cysteine [PATH:msim01100] msim_M00026   Histidine biosynthesis, PRPP => histidine [PATH:msim01100] msim_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:msim01100] msim_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:msim01100] msim_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:msim01100] msim_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:msim01100] msim_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:msim01100] msim_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:msim01100] msim_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:msim01100] msim_M00082   Fatty acid biosynthesis, initiation [PATH:msim01100] msim_M00083   Fatty acid biosynthesis, elongation [PATH:msim01100] msim_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:msim01100] msim_M00087   beta-Oxidation [PATH:msim01100] msim_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:msim01100] msim_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:msim01100] msim_M00098   Acylglycerol degradation [PATH:msim01100] msim_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:msim01100] msim_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:msim01100] msim_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:msim01100] msim_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:msim01100] msim_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:msim01100] msim_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:msim01100] msim_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:msim01100] msim_M00149   Succinate dehydrogenase, prokaryotes [PATH:msim01100] msim_M00151   Cytochrome bc1 complex respiratory unit [PATH:msim01100] msim_M00155   Cytochrome c oxidase, prokaryotes [PATH:msim01100] msim_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:msim01100] msim_M00168   CAM (Crassulacean acid metabolism), dark [PATH:msim01100] msim_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:msim01100] msim_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msim01100] msim_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:msim01100] msim_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:msim01100] msim_M00545   Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:msim01100] msim_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:msim01100] msim_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:msim01100] msim_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:msim01100] msim_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:msim01100] msim_M00621   Glycine cleavage system [PATH:msim01100] msim_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:msim01100] msim_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:msim01100] msim_M00793   dTDP-L-rhamnose biosynthesis [PATH:msim01100] msim_M00844   Arginine biosynthesis, ornithine => arginine [PATH:msim01100] msim_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:msim01100] msim_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:msim01100] msim_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:msim01100] msim_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:msim01100] msim_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:msim01100] msim_M00925   Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:msim01100] msim_M00926   Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:msim01100] msim_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:msim01100] msim_M00970   Proline degradation, proline => glutamate [PATH:msim01100] msim_M00972   Proline metabolism [PATH:msim01100] Organism Mycobacterium simiae [GN:msim] Related pathway msim00010   Glycolysis / Gluconeogenesis msim00020   Citrate cycle (TCA cycle) msim00030   Pentose phosphate pathway msim00040   Pentose and glucuronate interconversions msim00051   Fructose and mannose metabolism msim00052   Galactose metabolism msim00053   Ascorbate and aldarate metabolism msim00061   Fatty acid biosynthesis msim00071   Fatty acid degradation msim00100   Steroid biosynthesis msim00121   Secondary bile acid biosynthesis msim00130   Ubiquinone and other terpenoid-quinone biosynthesis msim00190   Oxidative phosphorylation msim00220   Arginine biosynthesis msim00230   Purine metabolism msim00240   Pyrimidine metabolism msim00250   Alanine, aspartate and glutamate metabolism msim00260   Glycine, serine and threonine metabolism msim00261   Monobactam biosynthesis msim00270   Cysteine and methionine metabolism msim00280   Valine, leucine and isoleucine degradation msim00290   Valine, leucine and isoleucine biosynthesis msim00300   Lysine biosynthesis msim00310   Lysine degradation msim00311   Penicillin and cephalosporin biosynthesis msim00330   Arginine and proline metabolism msim00332   Carbapenem biosynthesis msim00340   Histidine metabolism msim00350   Tyrosine metabolism msim00360   Phenylalanine metabolism msim00361   Chlorocyclohexane and chlorobenzene degradation msim00362   Benzoate degradation msim00364   Fluorobenzoate degradation msim00380   Tryptophan metabolism msim00400   Phenylalanine, tyrosine and tryptophan biosynthesis msim00401   Novobiocin biosynthesis msim00410   beta-Alanine metabolism msim00430   Taurine and hypotaurine metabolism msim00440   Phosphonate and phosphinate metabolism msim00450   Selenocompound metabolism msim00460   Cyanoamino acid metabolism msim00470   D-Amino acid metabolism msim00480   Glutathione metabolism msim00500   Starch and sucrose metabolism msim00514   Other types of O-glycan biosynthesis msim00515   Mannose type O-glycan biosynthesis msim00520   Amino sugar and nucleotide sugar metabolism msim00521   Streptomycin biosynthesis msim00523   Polyketide sugar unit biosynthesis msim00525   Acarbose and validamycin biosynthesis msim00540   Lipopolysaccharide biosynthesis msim00541   O-Antigen nucleotide sugar biosynthesis msim00542   O-Antigen repeat unit biosynthesis msim00543   Exopolysaccharide biosynthesis msim00550   Peptidoglycan biosynthesis msim00552   Teichoic acid biosynthesis msim00561   Glycerolipid metabolism msim00562   Inositol phosphate metabolism msim00564   Glycerophospholipid metabolism msim00571   Lipoarabinomannan (LAM) biosynthesis msim00572   Arabinogalactan biosynthesis - Mycobacterium msim00592   alpha-Linolenic acid metabolism msim00620   Pyruvate metabolism msim00621   Dioxin degradation msim00622   Xylene degradation msim00623   Toluene degradation msim00625   Chloroalkane and chloroalkene degradation msim00626   Naphthalene degradation msim00627   Aminobenzoate degradation msim00630   Glyoxylate and dicarboxylate metabolism msim00633   Nitrotoluene degradation msim00640   Propanoate metabolism msim00643   Styrene degradation msim00650   Butanoate metabolism msim00660   C5-Branched dibasic acid metabolism msim00670   One carbon pool by folate msim00680   Methane metabolism msim00710   Carbon fixation by Calvin cycle msim00720   Other carbon fixation pathways msim00730   Thiamine metabolism msim00740   Riboflavin metabolism msim00750   Vitamin B6 metabolism msim00760   Nicotinate and nicotinamide metabolism msim00770   Pantothenate and CoA biosynthesis msim00780   Biotin metabolism msim00785   Lipoic acid metabolism msim00790   Folate biosynthesis msim00860   Porphyrin metabolism msim00900   Terpenoid backbone biosynthesis msim00903   Limonene degradation msim00906   Carotenoid biosynthesis msim00907   Pinene, camphor and geraniol degradation msim00910   Nitrogen metabolism msim00920   Sulfur metabolism msim00930   Caprolactam degradation msim00946   Degradation of flavonoids msim00983   Drug metabolism - other enzymes msim00984   Steroid degradation msim00999   Biosynthesis of various plant secondary metabolites msim01040   Biosynthesis of unsaturated fatty acids msim01053   Biosynthesis of siderophore group nonribosomal peptides msim01055   Biosynthesis of vancomycin group antibiotics msim01059   Biosynthesis of enediyne antibiotics KO pathway ko01100     LinkDB All DBs

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