PATHWAY: nib01100 Help Entry nib01100                    Pathway                                 Name Metabolic pathways - Nibribacter ruber Class BRITE hierarchy Pathway map nib01100   Metabolic pathways Module nib_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:nib01100] nib_M00002   Glycolysis, core module involving three-carbon compounds [PATH:nib01100] nib_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nib01100] nib_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:nib01100] nib_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:nib01100] nib_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:nib01100] nib_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nib01100] nib_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nib01100] nib_M00021   Cysteine biosynthesis, serine => cysteine [PATH:nib01100] nib_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:nib01100] nib_M00026   Histidine biosynthesis, PRPP => histidine [PATH:nib01100] nib_M00035   Methionine degradation [PATH:nib01100] nib_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:nib01100] nib_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:nib01100] nib_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:nib01100] nib_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:nib01100] nib_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:nib01100] nib_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:nib01100] nib_M00063   CMP-KDO biosynthesis [PATH:nib01100] nib_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:nib01100] nib_M00082   Fatty acid biosynthesis, initiation [PATH:nib01100] nib_M00083   Fatty acid biosynthesis, elongation [PATH:nib01100] nib_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:nib01100] nib_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:nib01100] nib_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:nib01100] nib_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:nib01100] nib_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:nib01100] nib_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:nib01100] nib_M00155   Cytochrome c oxidase, prokaryotes [PATH:nib01100] nib_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:nib01100] nib_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nib01100] nib_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:nib01100] nib_M00527   Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:nib01100] nib_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:nib01100] nib_M00621   Glycine cleavage system [PATH:nib01100] nib_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:nib01100] nib_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:nib01100] nib_M00793   dTDP-L-rhamnose biosynthesis [PATH:nib01100] nib_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:nib01100] nib_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:nib01100] nib_M00970   Proline degradation, proline => glutamate [PATH:nib01100] Organism Nibribacter ruber [GN:nib] Related pathway nib00010   Glycolysis / Gluconeogenesis nib00020   Citrate cycle (TCA cycle) nib00030   Pentose phosphate pathway nib00040   Pentose and glucuronate interconversions nib00051   Fructose and mannose metabolism nib00052   Galactose metabolism nib00053   Ascorbate and aldarate metabolism nib00061   Fatty acid biosynthesis nib00071   Fatty acid degradation nib00100   Steroid biosynthesis nib00130   Ubiquinone and other terpenoid-quinone biosynthesis nib00190   Oxidative phosphorylation nib00220   Arginine biosynthesis nib00230   Purine metabolism nib00240   Pyrimidine metabolism nib00250   Alanine, aspartate and glutamate metabolism nib00260   Glycine, serine and threonine metabolism nib00261   Monobactam biosynthesis nib00270   Cysteine and methionine metabolism nib00280   Valine, leucine and isoleucine degradation nib00290   Valine, leucine and isoleucine biosynthesis nib00300   Lysine biosynthesis nib00310   Lysine degradation nib00311   Penicillin and cephalosporin biosynthesis nib00330   Arginine and proline metabolism nib00340   Histidine metabolism nib00350   Tyrosine metabolism nib00360   Phenylalanine metabolism nib00361   Chlorocyclohexane and chlorobenzene degradation nib00362   Benzoate degradation nib00364   Fluorobenzoate degradation nib00380   Tryptophan metabolism nib00400   Phenylalanine, tyrosine and tryptophan biosynthesis nib00401   Novobiocin biosynthesis nib00405   Phenazine biosynthesis nib00410   beta-Alanine metabolism nib00430   Taurine and hypotaurine metabolism nib00450   Selenocompound metabolism nib00460   Cyanoamino acid metabolism nib00470   D-Amino acid metabolism nib00480   Glutathione metabolism nib00500   Starch and sucrose metabolism nib00511   Other glycan degradation nib00520   Amino sugar and nucleotide sugar metabolism nib00521   Streptomycin biosynthesis nib00523   Polyketide sugar unit biosynthesis nib00525   Acarbose and validamycin biosynthesis nib00540   Lipopolysaccharide biosynthesis nib00541   O-Antigen nucleotide sugar biosynthesis nib00542   O-Antigen repeat unit biosynthesis nib00543   Exopolysaccharide biosynthesis nib00550   Peptidoglycan biosynthesis nib00552   Teichoic acid biosynthesis nib00561   Glycerolipid metabolism nib00562   Inositol phosphate metabolism nib00564   Glycerophospholipid metabolism nib00592   alpha-Linolenic acid metabolism nib00600   Sphingolipid metabolism nib00620   Pyruvate metabolism nib00622   Xylene degradation nib00623   Toluene degradation nib00625   Chloroalkane and chloroalkene degradation nib00627   Aminobenzoate degradation nib00630   Glyoxylate and dicarboxylate metabolism nib00633   Nitrotoluene degradation nib00640   Propanoate metabolism nib00643   Styrene degradation nib00650   Butanoate metabolism nib00670   One carbon pool by folate nib00680   Methane metabolism nib00710   Carbon fixation by Calvin cycle nib00720   Other carbon fixation pathways nib00730   Thiamine metabolism nib00740   Riboflavin metabolism nib00750   Vitamin B6 metabolism nib00760   Nicotinate and nicotinamide metabolism nib00770   Pantothenate and CoA biosynthesis nib00780   Biotin metabolism nib00785   Lipoic acid metabolism nib00790   Folate biosynthesis nib00860   Porphyrin metabolism nib00900   Terpenoid backbone biosynthesis nib00906   Carotenoid biosynthesis nib00907   Pinene, camphor and geraniol degradation nib00910   Nitrogen metabolism nib00920   Sulfur metabolism nib00946   Degradation of flavonoids nib00999   Biosynthesis of various plant secondary metabolites nib01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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