PATHWAY: nik01100 Help Entry nik01100                    Pathway                                 Name Metabolic pathways - Nitrincola iocasae Class BRITE hierarchy Pathway map nik01100   Metabolic pathways Module nik_M00002   Glycolysis, core module involving three-carbon compounds [PATH:nik01100] nik_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nik01100] nik_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:nik01100] nik_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:nik01100] nik_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:nik01100] nik_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nik01100] nik_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nik01100] nik_M00012   Glyoxylate cycle [PATH:nik01100] nik_M00015   Proline biosynthesis, glutamate => proline [PATH:nik01100] nik_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:nik01100] nik_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:nik01100] nik_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:nik01100] nik_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:nik01100] nik_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:nik01100] nik_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:nik01100] nik_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:nik01100] nik_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:nik01100] nik_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:nik01100] nik_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:nik01100] nik_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:nik01100] nik_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:nik01100] nik_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:nik01100] nik_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:nik01100] nik_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:nik01100] nik_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:nik01100] nik_M00063   CMP-KDO biosynthesis [PATH:nik01100] nik_M00082   Fatty acid biosynthesis, initiation [PATH:nik01100] nik_M00083   Fatty acid biosynthesis, elongation [PATH:nik01100] nik_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:nik01100] nik_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:nik01100] nik_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:nik01100] nik_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:nik01100] nik_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:nik01100] nik_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:nik01100] nik_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:nik01100] nik_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:nik01100] nik_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:nik01100] nik_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:nik01100] nik_M00149   Succinate dehydrogenase, prokaryotes [PATH:nik01100] nik_M00151   Cytochrome bc1 complex respiratory unit [PATH:nik01100] nik_M00155   Cytochrome c oxidase, prokaryotes [PATH:nik01100] nik_M00156   Cytochrome c oxidase, cbb3-type [PATH:nik01100] nik_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:nik01100] nik_M00165   Reductive pentose phosphate cycle (Calvin cycle) [PATH:nik01100] nik_M00168   CAM (Crassulacean acid metabolism), dark [PATH:nik01100] nik_M00175   Nitrogen fixation, nitrogen => ammonia [PATH:nik01100] nik_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nik01100] nik_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:nik01100] nik_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:nik01100] nik_M00548   Benzene degradation, benzene => catechol [PATH:nik01100] nik_M00555   Betaine biosynthesis, choline => betaine [PATH:nik01100] nik_M00569   Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:nik01100] nik_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:nik01100] nik_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:nik01100] nik_M00621   Glycine cleavage system [PATH:nik01100] nik_M00793   dTDP-L-rhamnose biosynthesis [PATH:nik01100] nik_M00844   Arginine biosynthesis, ornithine => arginine [PATH:nik01100] nik_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:nik01100] nik_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:nik01100] nik_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:nik01100] nik_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:nik01100] nik_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:nik01100] nik_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:nik01100] nik_M00970   Proline degradation, proline => glutamate [PATH:nik01100] nik_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:nik01100] Organism Nitrincola iocasae [GN:nik] Related pathway nik00010   Glycolysis / Gluconeogenesis nik00020   Citrate cycle (TCA cycle) nik00030   Pentose phosphate pathway nik00040   Pentose and glucuronate interconversions nik00051   Fructose and mannose metabolism nik00052   Galactose metabolism nik00053   Ascorbate and aldarate metabolism nik00061   Fatty acid biosynthesis nik00071   Fatty acid degradation nik00130   Ubiquinone and other terpenoid-quinone biosynthesis nik00190   Oxidative phosphorylation nik00220   Arginine biosynthesis nik00230   Purine metabolism nik00240   Pyrimidine metabolism nik00250   Alanine, aspartate and glutamate metabolism nik00260   Glycine, serine and threonine metabolism nik00261   Monobactam biosynthesis nik00270   Cysteine and methionine metabolism nik00280   Valine, leucine and isoleucine degradation nik00290   Valine, leucine and isoleucine biosynthesis nik00300   Lysine biosynthesis nik00310   Lysine degradation nik00330   Arginine and proline metabolism nik00332   Carbapenem biosynthesis nik00340   Histidine metabolism nik00350   Tyrosine metabolism nik00360   Phenylalanine metabolism nik00361   Chlorocyclohexane and chlorobenzene degradation nik00362   Benzoate degradation nik00380   Tryptophan metabolism nik00400   Phenylalanine, tyrosine and tryptophan biosynthesis nik00401   Novobiocin biosynthesis nik00405   Phenazine biosynthesis nik00410   beta-Alanine metabolism nik00430   Taurine and hypotaurine metabolism nik00440   Phosphonate and phosphinate metabolism nik00450   Selenocompound metabolism nik00460   Cyanoamino acid metabolism nik00470   D-Amino acid metabolism nik00480   Glutathione metabolism nik00500   Starch and sucrose metabolism nik00520   Amino sugar and nucleotide sugar metabolism nik00521   Streptomycin biosynthesis nik00523   Polyketide sugar unit biosynthesis nik00525   Acarbose and validamycin biosynthesis nik00540   Lipopolysaccharide biosynthesis nik00541   O-Antigen nucleotide sugar biosynthesis nik00543   Exopolysaccharide biosynthesis nik00550   Peptidoglycan biosynthesis nik00552   Teichoic acid biosynthesis nik00561   Glycerolipid metabolism nik00562   Inositol phosphate metabolism nik00564   Glycerophospholipid metabolism nik00592   alpha-Linolenic acid metabolism nik00620   Pyruvate metabolism nik00621   Dioxin degradation nik00622   Xylene degradation nik00623   Toluene degradation nik00625   Chloroalkane and chloroalkene degradation nik00626   Naphthalene degradation nik00627   Aminobenzoate degradation nik00630   Glyoxylate and dicarboxylate metabolism nik00633   Nitrotoluene degradation nik00640   Propanoate metabolism nik00643   Styrene degradation nik00650   Butanoate metabolism nik00660   C5-Branched dibasic acid metabolism nik00670   One carbon pool by folate nik00680   Methane metabolism nik00710   Carbon fixation by Calvin cycle nik00720   Other carbon fixation pathways nik00730   Thiamine metabolism nik00740   Riboflavin metabolism nik00750   Vitamin B6 metabolism nik00760   Nicotinate and nicotinamide metabolism nik00770   Pantothenate and CoA biosynthesis nik00780   Biotin metabolism nik00785   Lipoic acid metabolism nik00790   Folate biosynthesis nik00860   Porphyrin metabolism nik00900   Terpenoid backbone biosynthesis nik00907   Pinene, camphor and geraniol degradation nik00910   Nitrogen metabolism nik00920   Sulfur metabolism nik00930   Caprolactam degradation nik00984   Steroid degradation nik00999   Biosynthesis of various plant secondary metabolites nik01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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