PATHWAY: ocd01100 Help Entry ocd01100                    Pathway                                 Name Metabolic pathways - Oceanicola sp. D3 Class BRITE hierarchy Pathway map ocd01100   Metabolic pathways Module ocd_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ocd01100] ocd_M00002   Glycolysis, core module involving three-carbon compounds [PATH:ocd01100] ocd_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ocd01100] ocd_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:ocd01100] ocd_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ocd01100] ocd_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ocd01100] ocd_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:ocd01100] ocd_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ocd01100] ocd_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ocd01100] ocd_M00015   Proline biosynthesis, glutamate => proline [PATH:ocd01100] ocd_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:ocd01100] ocd_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:ocd01100] ocd_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:ocd01100] ocd_M00021   Cysteine biosynthesis, serine => cysteine [PATH:ocd01100] ocd_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:ocd01100] ocd_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:ocd01100] ocd_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:ocd01100] ocd_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:ocd01100] ocd_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:ocd01100] ocd_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:ocd01100] ocd_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:ocd01100] ocd_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:ocd01100] ocd_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ocd01100] ocd_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ocd01100] ocd_M00082   Fatty acid biosynthesis, initiation [PATH:ocd01100] ocd_M00083   Fatty acid biosynthesis, elongation [PATH:ocd01100] ocd_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:ocd01100] ocd_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:ocd01100] ocd_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:ocd01100] ocd_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:ocd01100] ocd_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:ocd01100] ocd_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:ocd01100] ocd_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:ocd01100] ocd_M00140   C1-unit interconversion, prokaryotes [PATH:ocd01100] ocd_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:ocd01100] ocd_M00149   Succinate dehydrogenase, prokaryotes [PATH:ocd01100] ocd_M00151   Cytochrome bc1 complex respiratory unit [PATH:ocd01100] ocd_M00155   Cytochrome c oxidase, prokaryotes [PATH:ocd01100] ocd_M00156   Cytochrome c oxidase, cbb3-type [PATH:ocd01100] ocd_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:ocd01100] ocd_M00169   CAM (Crassulacean acid metabolism), light [PATH:ocd01100] ocd_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ocd01100] ocd_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:ocd01100] ocd_M00373   Ethylmalonyl pathway [PATH:ocd01100] ocd_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:ocd01100] ocd_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:ocd01100] ocd_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:ocd01100] ocd_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:ocd01100] ocd_M00555   Betaine biosynthesis, choline => betaine [PATH:ocd01100] ocd_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:ocd01100] ocd_M00595   Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:ocd01100] ocd_M00621   Glycine cleavage system [PATH:ocd01100] ocd_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ocd01100] ocd_M00793   dTDP-L-rhamnose biosynthesis [PATH:ocd01100] ocd_M00844   Arginine biosynthesis, ornithine => arginine [PATH:ocd01100] ocd_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:ocd01100] ocd_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:ocd01100] ocd_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:ocd01100] ocd_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:ocd01100] ocd_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:ocd01100] ocd_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:ocd01100] ocd_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:ocd01100] ocd_M00970   Proline degradation, proline => glutamate [PATH:ocd01100] Organism Oceanicola sp. D3 [GN:ocd] Related pathway ocd00010   Glycolysis / Gluconeogenesis ocd00020   Citrate cycle (TCA cycle) ocd00030   Pentose phosphate pathway ocd00040   Pentose and glucuronate interconversions ocd00051   Fructose and mannose metabolism ocd00052   Galactose metabolism ocd00053   Ascorbate and aldarate metabolism ocd00061   Fatty acid biosynthesis ocd00071   Fatty acid degradation ocd00074   Mycolic acid biosynthesis ocd00121   Secondary bile acid biosynthesis ocd00130   Ubiquinone and other terpenoid-quinone biosynthesis ocd00190   Oxidative phosphorylation ocd00220   Arginine biosynthesis ocd00230   Purine metabolism ocd00240   Pyrimidine metabolism ocd00250   Alanine, aspartate and glutamate metabolism ocd00260   Glycine, serine and threonine metabolism ocd00261   Monobactam biosynthesis ocd00270   Cysteine and methionine metabolism ocd00280   Valine, leucine and isoleucine degradation ocd00290   Valine, leucine and isoleucine biosynthesis ocd00300   Lysine biosynthesis ocd00310   Lysine degradation ocd00311   Penicillin and cephalosporin biosynthesis ocd00330   Arginine and proline metabolism ocd00332   Carbapenem biosynthesis ocd00340   Histidine metabolism ocd00350   Tyrosine metabolism ocd00360   Phenylalanine metabolism ocd00361   Chlorocyclohexane and chlorobenzene degradation ocd00362   Benzoate degradation ocd00364   Fluorobenzoate degradation ocd00380   Tryptophan metabolism ocd00400   Phenylalanine, tyrosine and tryptophan biosynthesis ocd00401   Novobiocin biosynthesis ocd00405   Phenazine biosynthesis ocd00410   beta-Alanine metabolism ocd00430   Taurine and hypotaurine metabolism ocd00440   Phosphonate and phosphinate metabolism ocd00450   Selenocompound metabolism ocd00460   Cyanoamino acid metabolism ocd00470   D-Amino acid metabolism ocd00480   Glutathione metabolism ocd00500   Starch and sucrose metabolism ocd00520   Amino sugar and nucleotide sugar metabolism ocd00521   Streptomycin biosynthesis ocd00523   Polyketide sugar unit biosynthesis ocd00525   Acarbose and validamycin biosynthesis ocd00540   Lipopolysaccharide biosynthesis ocd00541   O-Antigen nucleotide sugar biosynthesis ocd00543   Exopolysaccharide biosynthesis ocd00550   Peptidoglycan biosynthesis ocd00552   Teichoic acid biosynthesis ocd00561   Glycerolipid metabolism ocd00562   Inositol phosphate metabolism ocd00564   Glycerophospholipid metabolism ocd00620   Pyruvate metabolism ocd00622   Xylene degradation ocd00623   Toluene degradation ocd00624   Polycyclic aromatic hydrocarbon degradation ocd00625   Chloroalkane and chloroalkene degradation ocd00626   Naphthalene degradation ocd00627   Aminobenzoate degradation ocd00630   Glyoxylate and dicarboxylate metabolism ocd00640   Propanoate metabolism ocd00643   Styrene degradation ocd00650   Butanoate metabolism ocd00660   C5-Branched dibasic acid metabolism ocd00670   One carbon pool by folate ocd00680   Methane metabolism ocd00710   Carbon fixation by Calvin cycle ocd00720   Other carbon fixation pathways ocd00730   Thiamine metabolism ocd00740   Riboflavin metabolism ocd00750   Vitamin B6 metabolism ocd00760   Nicotinate and nicotinamide metabolism ocd00770   Pantothenate and CoA biosynthesis ocd00780   Biotin metabolism ocd00785   Lipoic acid metabolism ocd00790   Folate biosynthesis ocd00860   Porphyrin metabolism ocd00900   Terpenoid backbone biosynthesis ocd00906   Carotenoid biosynthesis ocd00907   Pinene, camphor and geraniol degradation ocd00910   Nitrogen metabolism ocd00920   Sulfur metabolism ocd00930   Caprolactam degradation ocd00946   Degradation of flavonoids ocd00999   Biosynthesis of various plant secondary metabolites KO pathway ko01100     LinkDB All DBs

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