PATHWAY: paby01100 Help Entry paby01100                   Pathway                                 Name Metabolic pathways - Salipiger abyssi Class BRITE hierarchy Pathway map paby01100   Metabolic pathways Module paby_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:paby01100] paby_M00002   Glycolysis, core module involving three-carbon compounds [PATH:paby01100] paby_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:paby01100] paby_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:paby01100] paby_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:paby01100] paby_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:paby01100] paby_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:paby01100] paby_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:paby01100] paby_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:paby01100] paby_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paby01100] paby_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paby01100] paby_M00015   Proline biosynthesis, glutamate => proline [PATH:paby01100] paby_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:paby01100] paby_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:paby01100] paby_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:paby01100] paby_M00021   Cysteine biosynthesis, serine => cysteine [PATH:paby01100] paby_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:paby01100] paby_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:paby01100] paby_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:paby01100] paby_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:paby01100] paby_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:paby01100] paby_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:paby01100] paby_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:paby01100] paby_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:paby01100] paby_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:paby01100] paby_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:paby01100] paby_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:paby01100] paby_M00082   Fatty acid biosynthesis, initiation [PATH:paby01100] paby_M00083   Fatty acid biosynthesis, elongation [PATH:paby01100] paby_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:paby01100] paby_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:paby01100] paby_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:paby01100] paby_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:paby01100] paby_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:paby01100] paby_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:paby01100] paby_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:paby01100] paby_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:paby01100] paby_M00140   C1-unit interconversion, prokaryotes [PATH:paby01100] paby_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:paby01100] paby_M00149   Succinate dehydrogenase, prokaryotes [PATH:paby01100] paby_M00151   Cytochrome bc1 complex respiratory unit [PATH:paby01100] paby_M00155   Cytochrome c oxidase, prokaryotes [PATH:paby01100] paby_M00156   Cytochrome c oxidase, cbb3-type [PATH:paby01100] paby_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:paby01100] paby_M00165   Reductive pentose phosphate cycle (Calvin cycle) [PATH:paby01100] paby_M00169   CAM (Crassulacean acid metabolism), light [PATH:paby01100] paby_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paby01100] paby_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:paby01100] paby_M00373   Ethylmalonyl pathway [PATH:paby01100] paby_M00417   Cytochrome o ubiquinol oxidase [PATH:paby01100] paby_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:paby01100] paby_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:paby01100] paby_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:paby01100] paby_M00555   Betaine biosynthesis, choline => betaine [PATH:paby01100] paby_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:paby01100] paby_M00595   Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:paby01100] paby_M00621   Glycine cleavage system [PATH:paby01100] paby_M00623   Phthalate degradation, phthalate => protocatechuate [PATH:paby01100] paby_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:paby01100] paby_M00793   dTDP-L-rhamnose biosynthesis [PATH:paby01100] paby_M00844   Arginine biosynthesis, ornithine => arginine [PATH:paby01100] paby_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:paby01100] paby_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:paby01100] paby_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:paby01100] paby_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:paby01100] paby_M00925   Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:paby01100] paby_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:paby01100] paby_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:paby01100] paby_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:paby01100] paby_M00970   Proline degradation, proline => glutamate [PATH:paby01100] Organism Salipiger abyssi [GN:paby] Related pathway paby00010   Glycolysis / Gluconeogenesis paby00020   Citrate cycle (TCA cycle) paby00030   Pentose phosphate pathway paby00040   Pentose and glucuronate interconversions paby00051   Fructose and mannose metabolism paby00052   Galactose metabolism paby00053   Ascorbate and aldarate metabolism paby00061   Fatty acid biosynthesis paby00071   Fatty acid degradation paby00121   Secondary bile acid biosynthesis paby00130   Ubiquinone and other terpenoid-quinone biosynthesis paby00190   Oxidative phosphorylation paby00220   Arginine biosynthesis paby00230   Purine metabolism paby00240   Pyrimidine metabolism paby00250   Alanine, aspartate and glutamate metabolism paby00260   Glycine, serine and threonine metabolism paby00261   Monobactam biosynthesis paby00270   Cysteine and methionine metabolism paby00280   Valine, leucine and isoleucine degradation paby00290   Valine, leucine and isoleucine biosynthesis paby00300   Lysine biosynthesis paby00310   Lysine degradation paby00330   Arginine and proline metabolism paby00332   Carbapenem biosynthesis paby00340   Histidine metabolism paby00350   Tyrosine metabolism paby00360   Phenylalanine metabolism paby00361   Chlorocyclohexane and chlorobenzene degradation paby00362   Benzoate degradation paby00364   Fluorobenzoate degradation paby00365   Furfural degradation paby00380   Tryptophan metabolism paby00400   Phenylalanine, tyrosine and tryptophan biosynthesis paby00401   Novobiocin biosynthesis paby00405   Phenazine biosynthesis paby00410   beta-Alanine metabolism paby00430   Taurine and hypotaurine metabolism paby00440   Phosphonate and phosphinate metabolism paby00450   Selenocompound metabolism paby00460   Cyanoamino acid metabolism paby00470   D-Amino acid metabolism paby00480   Glutathione metabolism paby00500   Starch and sucrose metabolism paby00520   Amino sugar and nucleotide sugar metabolism paby00521   Streptomycin biosynthesis paby00523   Polyketide sugar unit biosynthesis paby00525   Acarbose and validamycin biosynthesis paby00540   Lipopolysaccharide biosynthesis paby00541   O-Antigen nucleotide sugar biosynthesis paby00543   Exopolysaccharide biosynthesis paby00550   Peptidoglycan biosynthesis paby00552   Teichoic acid biosynthesis paby00561   Glycerolipid metabolism paby00562   Inositol phosphate metabolism paby00564   Glycerophospholipid metabolism paby00600   Sphingolipid metabolism paby00620   Pyruvate metabolism paby00623   Toluene degradation paby00624   Polycyclic aromatic hydrocarbon degradation paby00625   Chloroalkane and chloroalkene degradation paby00626   Naphthalene degradation paby00627   Aminobenzoate degradation paby00630   Glyoxylate and dicarboxylate metabolism paby00633   Nitrotoluene degradation paby00640   Propanoate metabolism paby00643   Styrene degradation paby00650   Butanoate metabolism paby00660   C5-Branched dibasic acid metabolism paby00670   One carbon pool by folate paby00680   Methane metabolism paby00710   Carbon fixation by Calvin cycle paby00720   Other carbon fixation pathways paby00730   Thiamine metabolism paby00740   Riboflavin metabolism paby00750   Vitamin B6 metabolism paby00760   Nicotinate and nicotinamide metabolism paby00770   Pantothenate and CoA biosynthesis paby00780   Biotin metabolism paby00785   Lipoic acid metabolism paby00790   Folate biosynthesis paby00791   Atrazine degradation paby00860   Porphyrin metabolism paby00900   Terpenoid backbone biosynthesis paby00903   Limonene degradation paby00906   Carotenoid biosynthesis paby00907   Pinene, camphor and geraniol degradation paby00910   Nitrogen metabolism paby00920   Sulfur metabolism paby00930   Caprolactam degradation paby00946   Degradation of flavonoids paby00999   Biosynthesis of various plant secondary metabolites paby01053   Biosynthesis of siderophore group nonribosomal peptides paby01055   Biosynthesis of vancomycin group antibiotics paby01057   Biosynthesis of type II polyketide products KO pathway ko01100     LinkDB All DBs

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