PATHWAY: pamg01100 Help Entry pamg01100                   Pathway                                 Name Metabolic pathways - Pseudomonas amygdali Class BRITE hierarchy Pathway map pamg01100   Metabolic pathways Module pamg_M00002   Glycolysis, core module involving three-carbon compounds [PATH:pamg01100] pamg_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pamg01100] pamg_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pamg01100] pamg_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:pamg01100] pamg_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pamg01100] pamg_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pamg01100] pamg_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pamg01100] pamg_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:pamg01100] pamg_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pamg01100] pamg_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pamg01100] pamg_M00015   Proline biosynthesis, glutamate => proline [PATH:pamg01100] pamg_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pamg01100] pamg_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pamg01100] pamg_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pamg01100] pamg_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:pamg01100] pamg_M00021   Cysteine biosynthesis, serine => cysteine [PATH:pamg01100] pamg_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pamg01100] pamg_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:pamg01100] pamg_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pamg01100] pamg_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:pamg01100] pamg_M00034   Methionine salvage pathway [PATH:pamg01100] pamg_M00040   Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pamg01100] pamg_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:pamg01100] pamg_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pamg01100] pamg_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pamg01100] pamg_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pamg01100] pamg_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pamg01100] pamg_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pamg01100] pamg_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pamg01100] pamg_M00063   CMP-KDO biosynthesis [PATH:pamg01100] pamg_M00082   Fatty acid biosynthesis, initiation [PATH:pamg01100] pamg_M00083   Fatty acid biosynthesis, elongation [PATH:pamg01100] pamg_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:pamg01100] pamg_M00087   beta-Oxidation [PATH:pamg01100] pamg_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pamg01100] pamg_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pamg01100] pamg_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pamg01100] pamg_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:pamg01100] pamg_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:pamg01100] pamg_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pamg01100] pamg_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pamg01100] pamg_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pamg01100] pamg_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pamg01100] pamg_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pamg01100] pamg_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:pamg01100] pamg_M00149   Succinate dehydrogenase, prokaryotes [PATH:pamg01100] pamg_M00156   Cytochrome c oxidase, cbb3-type [PATH:pamg01100] pamg_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:pamg01100] pamg_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:pamg01100] pamg_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pamg01100] pamg_M00417   Cytochrome o ubiquinol oxidase [PATH:pamg01100] pamg_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pamg01100] pamg_M00546   Purine degradation, xanthine => urea [PATH:pamg01100] pamg_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pamg01100] pamg_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:pamg01100] pamg_M00555   Betaine biosynthesis, choline => betaine [PATH:pamg01100] pamg_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pamg01100] pamg_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pamg01100] pamg_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pamg01100] pamg_M00621   Glycine cleavage system [PATH:pamg01100] pamg_M00637   Anthranilate degradation, anthranilate => catechol [PATH:pamg01100] pamg_M00793   dTDP-L-rhamnose biosynthesis [PATH:pamg01100] pamg_M00844   Arginine biosynthesis, ornithine => arginine [PATH:pamg01100] pamg_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pamg01100] pamg_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:pamg01100] pamg_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pamg01100] pamg_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pamg01100] pamg_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pamg01100] pamg_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pamg01100] pamg_M00957   Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH:pamg01100] pamg_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:pamg01100] pamg_M00970   Proline degradation, proline => glutamate [PATH:pamg01100] pamg_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:pamg01100] Organism Pseudomonas amygdali [GN:pamg] Related pathway pamg00010   Glycolysis / Gluconeogenesis pamg00020   Citrate cycle (TCA cycle) pamg00030   Pentose phosphate pathway pamg00040   Pentose and glucuronate interconversions pamg00051   Fructose and mannose metabolism pamg00052   Galactose metabolism pamg00053   Ascorbate and aldarate metabolism pamg00061   Fatty acid biosynthesis pamg00071   Fatty acid degradation pamg00130   Ubiquinone and other terpenoid-quinone biosynthesis pamg00190   Oxidative phosphorylation pamg00220   Arginine biosynthesis pamg00230   Purine metabolism pamg00240   Pyrimidine metabolism pamg00250   Alanine, aspartate and glutamate metabolism pamg00260   Glycine, serine and threonine metabolism pamg00261   Monobactam biosynthesis pamg00270   Cysteine and methionine metabolism pamg00280   Valine, leucine and isoleucine degradation pamg00290   Valine, leucine and isoleucine biosynthesis pamg00300   Lysine biosynthesis pamg00310   Lysine degradation pamg00330   Arginine and proline metabolism pamg00332   Carbapenem biosynthesis pamg00340   Histidine metabolism pamg00350   Tyrosine metabolism pamg00360   Phenylalanine metabolism pamg00361   Chlorocyclohexane and chlorobenzene degradation pamg00362   Benzoate degradation pamg00364   Fluorobenzoate degradation pamg00380   Tryptophan metabolism pamg00400   Phenylalanine, tyrosine and tryptophan biosynthesis pamg00401   Novobiocin biosynthesis pamg00410   beta-Alanine metabolism pamg00430   Taurine and hypotaurine metabolism pamg00440   Phosphonate and phosphinate metabolism pamg00450   Selenocompound metabolism pamg00460   Cyanoamino acid metabolism pamg00470   D-Amino acid metabolism pamg00480   Glutathione metabolism pamg00500   Starch and sucrose metabolism pamg00520   Amino sugar and nucleotide sugar metabolism pamg00521   Streptomycin biosynthesis pamg00523   Polyketide sugar unit biosynthesis pamg00525   Acarbose and validamycin biosynthesis pamg00540   Lipopolysaccharide biosynthesis pamg00541   O-Antigen nucleotide sugar biosynthesis pamg00543   Exopolysaccharide biosynthesis pamg00550   Peptidoglycan biosynthesis pamg00552   Teichoic acid biosynthesis pamg00561   Glycerolipid metabolism pamg00562   Inositol phosphate metabolism pamg00564   Glycerophospholipid metabolism pamg00592   alpha-Linolenic acid metabolism pamg00620   Pyruvate metabolism pamg00622   Xylene degradation pamg00623   Toluene degradation pamg00625   Chloroalkane and chloroalkene degradation pamg00626   Naphthalene degradation pamg00627   Aminobenzoate degradation pamg00630   Glyoxylate and dicarboxylate metabolism pamg00640   Propanoate metabolism pamg00643   Styrene degradation pamg00650   Butanoate metabolism pamg00660   C5-Branched dibasic acid metabolism pamg00670   One carbon pool by folate pamg00680   Methane metabolism pamg00710   Carbon fixation by Calvin cycle pamg00720   Other carbon fixation pathways pamg00730   Thiamine metabolism pamg00740   Riboflavin metabolism pamg00750   Vitamin B6 metabolism pamg00760   Nicotinate and nicotinamide metabolism pamg00770   Pantothenate and CoA biosynthesis pamg00780   Biotin metabolism pamg00785   Lipoic acid metabolism pamg00790   Folate biosynthesis pamg00791   Atrazine degradation pamg00860   Porphyrin metabolism pamg00900   Terpenoid backbone biosynthesis pamg00907   Pinene, camphor and geraniol degradation pamg00910   Nitrogen metabolism pamg00920   Sulfur metabolism pamg00930   Caprolactam degradation pamg00946   Degradation of flavonoids pamg00996   Biosynthesis of various alkaloids pamg00997   Biosynthesis of various other secondary metabolites pamg00999   Biosynthesis of various plant secondary metabolites pamg01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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