KEGG   PATHWAY: pbc01100
Entry
pbc01100                    Pathway                                
Name
Metabolic pathways - Pseudomonas brassicacearum DF41
Class
Pathway map
pbc01100  Metabolic pathways
pbc01100

Module
pbc_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pbc01100]
pbc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pbc01100]
pbc_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pbc01100]
pbc_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pbc01100]
pbc_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pbc01100]
pbc_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pbc01100]
pbc_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pbc01100]
pbc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pbc01100]
pbc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pbc01100]
pbc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pbc01100]
pbc_M00015  Proline biosynthesis, glutamate => proline [PATH:pbc01100]
pbc_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pbc01100]
pbc_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pbc01100]
pbc_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pbc01100]
pbc_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pbc01100]
pbc_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pbc01100]
pbc_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pbc01100]
pbc_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pbc01100]
pbc_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:pbc01100]
pbc_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pbc01100]
pbc_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:pbc01100]
pbc_M00034  Methionine salvage pathway [PATH:pbc01100]
pbc_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pbc01100]
pbc_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pbc01100]
pbc_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:pbc01100]
pbc_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pbc01100]
pbc_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pbc01100]
pbc_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pbc01100]
pbc_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pbc01100]
pbc_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pbc01100]
pbc_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pbc01100]
pbc_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pbc01100]
pbc_M00063  CMP-KDO biosynthesis [PATH:pbc01100]
pbc_M00082  Fatty acid biosynthesis, initiation [PATH:pbc01100]
pbc_M00083  Fatty acid biosynthesis, elongation [PATH:pbc01100]
pbc_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:pbc01100]
pbc_M00087  beta-Oxidation [PATH:pbc01100]
pbc_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pbc01100]
pbc_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pbc01100]
pbc_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pbc01100]
pbc_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:pbc01100]
pbc_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pbc01100]
pbc_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:pbc01100]
pbc_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pbc01100]
pbc_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pbc01100]
pbc_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pbc01100]
pbc_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pbc01100]
pbc_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:pbc01100]
pbc_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:pbc01100]
pbc_M00149  Succinate dehydrogenase, prokaryotes [PATH:pbc01100]
pbc_M00151  Cytochrome bc1 complex respiratory unit [PATH:pbc01100]
pbc_M00155  Cytochrome c oxidase, prokaryotes [PATH:pbc01100]
pbc_M00156  Cytochrome c oxidase, cbb3-type [PATH:pbc01100]
pbc_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pbc01100]
pbc_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pbc01100]
pbc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pbc01100]
pbc_M00417  Cytochrome o ubiquinol oxidase [PATH:pbc01100]
pbc_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pbc01100]
pbc_M00529  Denitrification, nitrate => nitrogen [PATH:pbc01100]
pbc_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:pbc01100]
pbc_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:pbc01100]
pbc_M00533  Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:pbc01100]
pbc_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pbc01100]
pbc_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:pbc01100]
pbc_M00555  Betaine biosynthesis, choline => betaine [PATH:pbc01100]
pbc_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pbc01100]
pbc_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pbc01100]
pbc_M00621  Glycine cleavage system [PATH:pbc01100]
pbc_M00793  dTDP-L-rhamnose biosynthesis [PATH:pbc01100]
pbc_M00844  Arginine biosynthesis, ornithine => arginine [PATH:pbc01100]
pbc_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:pbc01100]
pbc_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pbc01100]
pbc_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pbc01100]
pbc_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pbc01100]
pbc_M00919  Ectoine degradation, ectoine => aspartate [PATH:pbc01100]
pbc_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pbc01100]
pbc_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:pbc01100]
pbc_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:pbc01100]
pbc_M00970  Proline degradation, proline => glutamate [PATH:pbc01100]
pbc_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:pbc01100]
Organism
Pseudomonas brassicacearum DF41 [GN:pbc]
Related
pathway
pbc00010  Glycolysis / Gluconeogenesis
pbc00020  Citrate cycle (TCA cycle)
pbc00030  Pentose phosphate pathway
pbc00040  Pentose and glucuronate interconversions
pbc00051  Fructose and mannose metabolism
pbc00052  Galactose metabolism
pbc00053  Ascorbate and aldarate metabolism
pbc00061  Fatty acid biosynthesis
pbc00071  Fatty acid degradation
pbc00130  Ubiquinone and other terpenoid-quinone biosynthesis
pbc00190  Oxidative phosphorylation
pbc00220  Arginine biosynthesis
pbc00230  Purine metabolism
pbc00240  Pyrimidine metabolism
pbc00250  Alanine, aspartate and glutamate metabolism
pbc00260  Glycine, serine and threonine metabolism
pbc00261  Monobactam biosynthesis
pbc00270  Cysteine and methionine metabolism
pbc00280  Valine, leucine and isoleucine degradation
pbc00290  Valine, leucine and isoleucine biosynthesis
pbc00300  Lysine biosynthesis
pbc00310  Lysine degradation
pbc00330  Arginine and proline metabolism
pbc00332  Carbapenem biosynthesis
pbc00333  Prodigiosin biosynthesis
pbc00340  Histidine metabolism
pbc00350  Tyrosine metabolism
pbc00360  Phenylalanine metabolism
pbc00361  Chlorocyclohexane and chlorobenzene degradation
pbc00362  Benzoate degradation
pbc00380  Tryptophan metabolism
pbc00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pbc00401  Novobiocin biosynthesis
pbc00410  beta-Alanine metabolism
pbc00430  Taurine and hypotaurine metabolism
pbc00450  Selenocompound metabolism
pbc00460  Cyanoamino acid metabolism
pbc00470  D-Amino acid metabolism
pbc00480  Glutathione metabolism
pbc00500  Starch and sucrose metabolism
pbc00520  Amino sugar and nucleotide sugar metabolism
pbc00521  Streptomycin biosynthesis
pbc00523  Polyketide sugar unit biosynthesis
pbc00525  Acarbose and validamycin biosynthesis
pbc00540  Lipopolysaccharide biosynthesis
pbc00541  O-Antigen nucleotide sugar biosynthesis
pbc00543  Exopolysaccharide biosynthesis
pbc00550  Peptidoglycan biosynthesis
pbc00552  Teichoic acid biosynthesis
pbc00561  Glycerolipid metabolism
pbc00562  Inositol phosphate metabolism
pbc00564  Glycerophospholipid metabolism
pbc00565  Ether lipid metabolism
pbc00592  alpha-Linolenic acid metabolism
pbc00620  Pyruvate metabolism
pbc00622  Xylene degradation
pbc00623  Toluene degradation
pbc00625  Chloroalkane and chloroalkene degradation
pbc00626  Naphthalene degradation
pbc00627  Aminobenzoate degradation
pbc00630  Glyoxylate and dicarboxylate metabolism
pbc00633  Nitrotoluene degradation
pbc00640  Propanoate metabolism
pbc00643  Styrene degradation
pbc00650  Butanoate metabolism
pbc00660  C5-Branched dibasic acid metabolism
pbc00670  One carbon pool by folate
pbc00680  Methane metabolism
pbc00710  Carbon fixation by Calvin cycle
pbc00720  Other carbon fixation pathways
pbc00730  Thiamine metabolism
pbc00740  Riboflavin metabolism
pbc00750  Vitamin B6 metabolism
pbc00760  Nicotinate and nicotinamide metabolism
pbc00770  Pantothenate and CoA biosynthesis
pbc00780  Biotin metabolism
pbc00785  Lipoic acid metabolism
pbc00790  Folate biosynthesis
pbc00791  Atrazine degradation
pbc00860  Porphyrin metabolism
pbc00900  Terpenoid backbone biosynthesis
pbc00907  Pinene, camphor and geraniol degradation
pbc00910  Nitrogen metabolism
pbc00920  Sulfur metabolism
pbc00930  Caprolactam degradation
pbc00946  Degradation of flavonoids
pbc00984  Steroid degradation
pbc00996  Biosynthesis of various alkaloids
pbc00997  Biosynthesis of various other secondary metabolites
pbc00999  Biosynthesis of various plant secondary metabolites
pbc01040  Biosynthesis of unsaturated fatty acids
pbc01053  Biosynthesis of siderophore group nonribosomal peptides
pbc01055  Biosynthesis of vancomycin group antibiotics
KO pathway
ko01100   
LinkDB

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