PATHWAY: pcol01100 Help Entry pcol01100                   Pathway                                 Name Metabolic pathways - Proteus columbae Class BRITE hierarchy Pathway map pcol01100   Metabolic pathways Module pcol_M00002   Glycolysis, core module involving three-carbon compounds [PATH:pcol01100] pcol_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcol01100] pcol_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pcol01100] pcol_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:pcol01100] pcol_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pcol01100] pcol_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pcol01100] pcol_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pcol01100] pcol_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcol01100] pcol_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcol01100] pcol_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcol01100] pcol_M00012   Glyoxylate cycle [PATH:pcol01100] pcol_M00015   Proline biosynthesis, glutamate => proline [PATH:pcol01100] pcol_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pcol01100] pcol_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pcol01100] pcol_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pcol01100] pcol_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pcol01100] pcol_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:pcol01100] pcol_M00021   Cysteine biosynthesis, serine => cysteine [PATH:pcol01100] pcol_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pcol01100] pcol_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:pcol01100] pcol_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pcol01100] pcol_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:pcol01100] pcol_M00026   Histidine biosynthesis, PRPP => histidine [PATH:pcol01100] pcol_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:pcol01100] pcol_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pcol01100] pcol_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pcol01100] pcol_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pcol01100] pcol_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:pcol01100] pcol_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pcol01100] pcol_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pcol01100] pcol_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:pcol01100] pcol_M00063   CMP-KDO biosynthesis [PATH:pcol01100] pcol_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:pcol01100] pcol_M00082   Fatty acid biosynthesis, initiation [PATH:pcol01100] pcol_M00083   Fatty acid biosynthesis, elongation [PATH:pcol01100] pcol_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:pcol01100] pcol_M00087   beta-Oxidation [PATH:pcol01100] pcol_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pcol01100] pcol_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:pcol01100] pcol_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:pcol01100] pcol_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pcol01100] pcol_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:pcol01100] pcol_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pcol01100] pcol_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:pcol01100] pcol_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pcol01100] pcol_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pcol01100] pcol_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pcol01100] pcol_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pcol01100] pcol_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:pcol01100] pcol_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:pcol01100] pcol_M00140   C1-unit interconversion, prokaryotes [PATH:pcol01100] pcol_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:pcol01100] pcol_M00149   Succinate dehydrogenase, prokaryotes [PATH:pcol01100] pcol_M00150   Fumarate reductase, prokaryotes [PATH:pcol01100] pcol_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:pcol01100] pcol_M00168   CAM (Crassulacean acid metabolism), dark [PATH:pcol01100] pcol_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:pcol01100] pcol_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcol01100] pcol_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:pcol01100] pcol_M00417   Cytochrome o ubiquinol oxidase [PATH:pcol01100] pcol_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pcol01100] pcol_M00526   Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH:pcol01100] pcol_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:pcol01100] pcol_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:pcol01100] pcol_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pcol01100] pcol_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pcol01100] pcol_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pcol01100] pcol_M00621   Glycine cleavage system [PATH:pcol01100] pcol_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:pcol01100] pcol_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:pcol01100] pcol_M00844   Arginine biosynthesis, ornithine => arginine [PATH:pcol01100] pcol_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pcol01100] pcol_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pcol01100] pcol_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pcol01100] pcol_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pcol01100] pcol_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pcol01100] pcol_M00970   Proline degradation, proline => glutamate [PATH:pcol01100] Organism Proteus columbae [GN:pcol] Related pathway pcol00010   Glycolysis / Gluconeogenesis pcol00020   Citrate cycle (TCA cycle) pcol00030   Pentose phosphate pathway pcol00040   Pentose and glucuronate interconversions pcol00051   Fructose and mannose metabolism pcol00052   Galactose metabolism pcol00053   Ascorbate and aldarate metabolism pcol00061   Fatty acid biosynthesis pcol00071   Fatty acid degradation pcol00130   Ubiquinone and other terpenoid-quinone biosynthesis pcol00190   Oxidative phosphorylation pcol00220   Arginine biosynthesis pcol00230   Purine metabolism pcol00240   Pyrimidine metabolism pcol00250   Alanine, aspartate and glutamate metabolism pcol00253   Tetracycline biosynthesis pcol00260   Glycine, serine and threonine metabolism pcol00261   Monobactam biosynthesis pcol00270   Cysteine and methionine metabolism pcol00280   Valine, leucine and isoleucine degradation pcol00290   Valine, leucine and isoleucine biosynthesis pcol00300   Lysine biosynthesis pcol00310   Lysine degradation pcol00330   Arginine and proline metabolism pcol00332   Carbapenem biosynthesis pcol00340   Histidine metabolism pcol00350   Tyrosine metabolism pcol00360   Phenylalanine metabolism pcol00362   Benzoate degradation pcol00380   Tryptophan metabolism pcol00400   Phenylalanine, tyrosine and tryptophan biosynthesis pcol00401   Novobiocin biosynthesis pcol00410   beta-Alanine metabolism pcol00430   Taurine and hypotaurine metabolism pcol00450   Selenocompound metabolism pcol00460   Cyanoamino acid metabolism pcol00470   D-Amino acid metabolism pcol00480   Glutathione metabolism pcol00500   Starch and sucrose metabolism pcol00520   Amino sugar and nucleotide sugar metabolism pcol00521   Streptomycin biosynthesis pcol00523   Polyketide sugar unit biosynthesis pcol00525   Acarbose and validamycin biosynthesis pcol00540   Lipopolysaccharide biosynthesis pcol00541   O-Antigen nucleotide sugar biosynthesis pcol00542   O-Antigen repeat unit biosynthesis pcol00543   Exopolysaccharide biosynthesis pcol00550   Peptidoglycan biosynthesis pcol00552   Teichoic acid biosynthesis pcol00561   Glycerolipid metabolism pcol00562   Inositol phosphate metabolism pcol00564   Glycerophospholipid metabolism pcol00565   Ether lipid metabolism pcol00592   alpha-Linolenic acid metabolism pcol00620   Pyruvate metabolism pcol00625   Chloroalkane and chloroalkene degradation pcol00626   Naphthalene degradation pcol00627   Aminobenzoate degradation pcol00630   Glyoxylate and dicarboxylate metabolism pcol00640   Propanoate metabolism pcol00650   Butanoate metabolism pcol00660   C5-Branched dibasic acid metabolism pcol00670   One carbon pool by folate pcol00680   Methane metabolism pcol00710   Carbon fixation by Calvin cycle pcol00720   Other carbon fixation pathways pcol00730   Thiamine metabolism pcol00740   Riboflavin metabolism pcol00750   Vitamin B6 metabolism pcol00760   Nicotinate and nicotinamide metabolism pcol00770   Pantothenate and CoA biosynthesis pcol00780   Biotin metabolism pcol00785   Lipoic acid metabolism pcol00790   Folate biosynthesis pcol00860   Porphyrin metabolism pcol00900   Terpenoid backbone biosynthesis pcol00907   Pinene, camphor and geraniol degradation pcol00910   Nitrogen metabolism pcol00920   Sulfur metabolism pcol00930   Caprolactam degradation pcol00999   Biosynthesis of various plant secondary metabolites pcol01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

DBGET integrated database retrieval system