KEGG   PATHWAY: pds01100
Entry
pds01100                    Pathway                                
Name
Metabolic pathways - Photobacterium damselae subsp. damselae
Class
Pathway map
pds01100  Metabolic pathways
pds01100

Module
pds_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pds01100]
pds_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pds01100]
pds_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pds01100]
pds_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pds01100]
pds_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pds01100]
pds_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pds01100]
pds_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pds01100]
pds_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pds01100]
pds_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pds01100]
pds_M00012  Glyoxylate cycle [PATH:pds01100]
pds_M00015  Proline biosynthesis, glutamate => proline [PATH:pds01100]
pds_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pds01100]
pds_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:pds01100]
pds_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pds01100]
pds_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pds01100]
pds_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pds01100]
pds_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pds01100]
pds_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pds01100]
pds_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:pds01100]
pds_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pds01100]
pds_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:pds01100]
pds_M00026  Histidine biosynthesis, PRPP => histidine [PATH:pds01100]
pds_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pds01100]
pds_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pds01100]
pds_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pds01100]
pds_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:pds01100]
pds_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pds01100]
pds_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pds01100]
pds_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:pds01100]
pds_M00063  CMP-KDO biosynthesis [PATH:pds01100]
pds_M00082  Fatty acid biosynthesis, initiation [PATH:pds01100]
pds_M00083  Fatty acid biosynthesis, elongation [PATH:pds01100]
pds_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:pds01100]
pds_M00087  beta-Oxidation [PATH:pds01100]
pds_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pds01100]
pds_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:pds01100]
pds_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pds01100]
pds_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:pds01100]
pds_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pds01100]
pds_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:pds01100]
pds_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:pds01100]
pds_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pds01100]
pds_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pds01100]
pds_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pds01100]
pds_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pds01100]
pds_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:pds01100]
pds_M00140  C1-unit interconversion, prokaryotes [PATH:pds01100]
pds_M00149  Succinate dehydrogenase, prokaryotes [PATH:pds01100]
pds_M00150  Fumarate reductase, prokaryotes [PATH:pds01100]
pds_M00151  Cytochrome bc1 complex respiratory unit [PATH:pds01100]
pds_M00155  Cytochrome c oxidase, prokaryotes [PATH:pds01100]
pds_M00156  Cytochrome c oxidase, cbb3-type [PATH:pds01100]
pds_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pds01100]
pds_M00168  CAM (Crassulacean acid metabolism), dark [PATH:pds01100]
pds_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pds01100]
pds_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pds01100]
pds_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:pds01100]
pds_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pds01100]
pds_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:pds01100]
pds_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:pds01100]
pds_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pds01100]
pds_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pds01100]
pds_M00621  Glycine cleavage system [PATH:pds01100]
pds_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:pds01100]
pds_M00793  dTDP-L-rhamnose biosynthesis [PATH:pds01100]
pds_M00844  Arginine biosynthesis, ornithine => arginine [PATH:pds01100]
pds_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pds01100]
pds_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pds01100]
pds_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pds01100]
pds_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pds01100]
pds_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pds01100]
pds_M00970  Proline degradation, proline => glutamate [PATH:pds01100]
Organism
Photobacterium damselae subsp. damselae [GN:pds]
Related
pathway
pds00010  Glycolysis / Gluconeogenesis
pds00020  Citrate cycle (TCA cycle)
pds00030  Pentose phosphate pathway
pds00040  Pentose and glucuronate interconversions
pds00051  Fructose and mannose metabolism
pds00052  Galactose metabolism
pds00053  Ascorbate and aldarate metabolism
pds00061  Fatty acid biosynthesis
pds00071  Fatty acid degradation
pds00121  Secondary bile acid biosynthesis
pds00130  Ubiquinone and other terpenoid-quinone biosynthesis
pds00190  Oxidative phosphorylation
pds00220  Arginine biosynthesis
pds00230  Purine metabolism
pds00240  Pyrimidine metabolism
pds00250  Alanine, aspartate and glutamate metabolism
pds00260  Glycine, serine and threonine metabolism
pds00261  Monobactam biosynthesis
pds00270  Cysteine and methionine metabolism
pds00280  Valine, leucine and isoleucine degradation
pds00290  Valine, leucine and isoleucine biosynthesis
pds00300  Lysine biosynthesis
pds00310  Lysine degradation
pds00330  Arginine and proline metabolism
pds00332  Carbapenem biosynthesis
pds00340  Histidine metabolism
pds00350  Tyrosine metabolism
pds00360  Phenylalanine metabolism
pds00362  Benzoate degradation
pds00380  Tryptophan metabolism
pds00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pds00401  Novobiocin biosynthesis
pds00410  beta-Alanine metabolism
pds00430  Taurine and hypotaurine metabolism
pds00450  Selenocompound metabolism
pds00460  Cyanoamino acid metabolism
pds00470  D-Amino acid metabolism
pds00480  Glutathione metabolism
pds00500  Starch and sucrose metabolism
pds00511  Other glycan degradation
pds00520  Amino sugar and nucleotide sugar metabolism
pds00521  Streptomycin biosynthesis
pds00523  Polyketide sugar unit biosynthesis
pds00525  Acarbose and validamycin biosynthesis
pds00540  Lipopolysaccharide biosynthesis
pds00541  O-Antigen nucleotide sugar biosynthesis
pds00542  O-Antigen repeat unit biosynthesis
pds00543  Exopolysaccharide biosynthesis
pds00550  Peptidoglycan biosynthesis
pds00552  Teichoic acid biosynthesis
pds00561  Glycerolipid metabolism
pds00562  Inositol phosphate metabolism
pds00564  Glycerophospholipid metabolism
pds00565  Ether lipid metabolism
pds00592  alpha-Linolenic acid metabolism
pds00600  Sphingolipid metabolism
pds00620  Pyruvate metabolism
pds00625  Chloroalkane and chloroalkene degradation
pds00626  Naphthalene degradation
pds00627  Aminobenzoate degradation
pds00630  Glyoxylate and dicarboxylate metabolism
pds00633  Nitrotoluene degradation
pds00640  Propanoate metabolism
pds00650  Butanoate metabolism
pds00660  C5-Branched dibasic acid metabolism
pds00670  One carbon pool by folate
pds00680  Methane metabolism
pds00710  Carbon fixation by Calvin cycle
pds00720  Other carbon fixation pathways
pds00730  Thiamine metabolism
pds00740  Riboflavin metabolism
pds00750  Vitamin B6 metabolism
pds00760  Nicotinate and nicotinamide metabolism
pds00770  Pantothenate and CoA biosynthesis
pds00780  Biotin metabolism
pds00785  Lipoic acid metabolism
pds00790  Folate biosynthesis
pds00860  Porphyrin metabolism
pds00900  Terpenoid backbone biosynthesis
pds00903  Limonene degradation
pds00907  Pinene, camphor and geraniol degradation
pds00910  Nitrogen metabolism
pds00920  Sulfur metabolism
pds00930  Caprolactam degradation
pds00999  Biosynthesis of various plant secondary metabolites
pds01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
LinkDB

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