PATHWAY: pgy01100 Help Entry pgy01100                    Pathway                                 Name Metabolic pathways - Pseudomonas glycinae Class BRITE hierarchy Pathway map pgy01100   Metabolic pathways Module pgy_M00002   Glycolysis, core module involving three-carbon compounds [PATH:pgy01100] pgy_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pgy01100] pgy_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pgy01100] pgy_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:pgy01100] pgy_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pgy01100] pgy_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pgy01100] pgy_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pgy01100] pgy_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:pgy01100] pgy_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pgy01100] pgy_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pgy01100] pgy_M00015   Proline biosynthesis, glutamate => proline [PATH:pgy01100] pgy_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pgy01100] pgy_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pgy01100] pgy_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pgy01100] pgy_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:pgy01100] pgy_M00021   Cysteine biosynthesis, serine => cysteine [PATH:pgy01100] pgy_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pgy01100] pgy_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:pgy01100] pgy_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pgy01100] pgy_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:pgy01100] pgy_M00034   Methionine salvage pathway [PATH:pgy01100] pgy_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pgy01100] pgy_M00040   Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pgy01100] pgy_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:pgy01100] pgy_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pgy01100] pgy_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pgy01100] pgy_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pgy01100] pgy_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pgy01100] pgy_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pgy01100] pgy_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pgy01100] pgy_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pgy01100] pgy_M00063   CMP-KDO biosynthesis [PATH:pgy01100] pgy_M00082   Fatty acid biosynthesis, initiation [PATH:pgy01100] pgy_M00083   Fatty acid biosynthesis, elongation [PATH:pgy01100] pgy_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:pgy01100] pgy_M00087   beta-Oxidation [PATH:pgy01100] pgy_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pgy01100] pgy_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pgy01100] pgy_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pgy01100] pgy_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:pgy01100] pgy_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pgy01100] pgy_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pgy01100] pgy_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pgy01100] pgy_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pgy01100] pgy_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pgy01100] pgy_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:pgy01100] pgy_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:pgy01100] pgy_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:pgy01100] pgy_M00149   Succinate dehydrogenase, prokaryotes [PATH:pgy01100] pgy_M00151   Cytochrome bc1 complex respiratory unit [PATH:pgy01100] pgy_M00155   Cytochrome c oxidase, prokaryotes [PATH:pgy01100] pgy_M00156   Cytochrome c oxidase, cbb3-type [PATH:pgy01100] pgy_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:pgy01100] pgy_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:pgy01100] pgy_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pgy01100] pgy_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pgy01100] pgy_M00417   Cytochrome o ubiquinol oxidase [PATH:pgy01100] pgy_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pgy01100] pgy_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:pgy01100] pgy_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pgy01100] pgy_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pgy01100] pgy_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:pgy01100] pgy_M00555   Betaine biosynthesis, choline => betaine [PATH:pgy01100] pgy_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pgy01100] pgy_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pgy01100] pgy_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pgy01100] pgy_M00621   Glycine cleavage system [PATH:pgy01100] pgy_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:pgy01100] pgy_M00793   dTDP-L-rhamnose biosynthesis [PATH:pgy01100] pgy_M00844   Arginine biosynthesis, ornithine => arginine [PATH:pgy01100] pgy_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pgy01100] pgy_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:pgy01100] pgy_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pgy01100] pgy_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pgy01100] pgy_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pgy01100] pgy_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pgy01100] pgy_M00947   D-Arginine racemization, D-arginine => L-arginine [PATH:pgy01100] pgy_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:pgy01100] pgy_M00957   Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH:pgy01100] pgy_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:pgy01100] pgy_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:pgy01100] pgy_M00970   Proline degradation, proline => glutamate [PATH:pgy01100] pgy_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:pgy01100] Organism Pseudomonas glycinae [GN:pgy] Related pathway pgy00010   Glycolysis / Gluconeogenesis pgy00020   Citrate cycle (TCA cycle) pgy00030   Pentose phosphate pathway pgy00040   Pentose and glucuronate interconversions pgy00051   Fructose and mannose metabolism pgy00052   Galactose metabolism pgy00053   Ascorbate and aldarate metabolism pgy00061   Fatty acid biosynthesis pgy00071   Fatty acid degradation pgy00130   Ubiquinone and other terpenoid-quinone biosynthesis pgy00190   Oxidative phosphorylation pgy00220   Arginine biosynthesis pgy00230   Purine metabolism pgy00240   Pyrimidine metabolism pgy00250   Alanine, aspartate and glutamate metabolism pgy00260   Glycine, serine and threonine metabolism pgy00261   Monobactam biosynthesis pgy00270   Cysteine and methionine metabolism pgy00280   Valine, leucine and isoleucine degradation pgy00290   Valine, leucine and isoleucine biosynthesis pgy00300   Lysine biosynthesis pgy00310   Lysine degradation pgy00330   Arginine and proline metabolism pgy00332   Carbapenem biosynthesis pgy00340   Histidine metabolism pgy00350   Tyrosine metabolism pgy00360   Phenylalanine metabolism pgy00361   Chlorocyclohexane and chlorobenzene degradation pgy00362   Benzoate degradation pgy00364   Fluorobenzoate degradation pgy00380   Tryptophan metabolism pgy00400   Phenylalanine, tyrosine and tryptophan biosynthesis pgy00401   Novobiocin biosynthesis pgy00410   beta-Alanine metabolism pgy00430   Taurine and hypotaurine metabolism pgy00440   Phosphonate and phosphinate metabolism pgy00450   Selenocompound metabolism pgy00460   Cyanoamino acid metabolism pgy00470   D-Amino acid metabolism pgy00480   Glutathione metabolism pgy00500   Starch and sucrose metabolism pgy00520   Amino sugar and nucleotide sugar metabolism pgy00521   Streptomycin biosynthesis pgy00523   Polyketide sugar unit biosynthesis pgy00525   Acarbose and validamycin biosynthesis pgy00540   Lipopolysaccharide biosynthesis pgy00541   O-Antigen nucleotide sugar biosynthesis pgy00543   Exopolysaccharide biosynthesis pgy00550   Peptidoglycan biosynthesis pgy00552   Teichoic acid biosynthesis pgy00561   Glycerolipid metabolism pgy00562   Inositol phosphate metabolism pgy00564   Glycerophospholipid metabolism pgy00592   alpha-Linolenic acid metabolism pgy00620   Pyruvate metabolism pgy00622   Xylene degradation pgy00623   Toluene degradation pgy00625   Chloroalkane and chloroalkene degradation pgy00626   Naphthalene degradation pgy00627   Aminobenzoate degradation pgy00630   Glyoxylate and dicarboxylate metabolism pgy00633   Nitrotoluene degradation pgy00640   Propanoate metabolism pgy00643   Styrene degradation pgy00650   Butanoate metabolism pgy00660   C5-Branched dibasic acid metabolism pgy00670   One carbon pool by folate pgy00680   Methane metabolism pgy00710   Carbon fixation by Calvin cycle pgy00720   Other carbon fixation pathways pgy00730   Thiamine metabolism pgy00740   Riboflavin metabolism pgy00750   Vitamin B6 metabolism pgy00760   Nicotinate and nicotinamide metabolism pgy00770   Pantothenate and CoA biosynthesis pgy00780   Biotin metabolism pgy00785   Lipoic acid metabolism pgy00790   Folate biosynthesis pgy00791   Atrazine degradation pgy00860   Porphyrin metabolism pgy00900   Terpenoid backbone biosynthesis pgy00907   Pinene, camphor and geraniol degradation pgy00910   Nitrogen metabolism pgy00920   Sulfur metabolism pgy00930   Caprolactam degradation pgy00946   Degradation of flavonoids pgy00984   Steroid degradation pgy00999   Biosynthesis of various plant secondary metabolites pgy01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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