KEGG   PATHWAY: pmk01100
Entry
pmk01100                    Pathway                                
Name
Metabolic pathways - Pseudomonas mendocina NK-01
Class
Pathway map
pmk01100  Metabolic pathways
pmk01100

Module
pmk_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pmk01100]
pmk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmk01100]
pmk_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pmk01100]
pmk_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pmk01100]
pmk_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pmk01100]
pmk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmk01100]
pmk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmk01100]
pmk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmk01100]
pmk_M00015  Proline biosynthesis, glutamate => proline [PATH:pmk01100]
pmk_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pmk01100]
pmk_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pmk01100]
pmk_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pmk01100]
pmk_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pmk01100]
pmk_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pmk01100]
pmk_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pmk01100]
pmk_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:pmk01100]
pmk_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pmk01100]
pmk_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:pmk01100]
pmk_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pmk01100]
pmk_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:pmk01100]
pmk_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pmk01100]
pmk_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pmk01100]
pmk_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pmk01100]
pmk_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pmk01100]
pmk_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pmk01100]
pmk_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pmk01100]
pmk_M00063  CMP-KDO biosynthesis [PATH:pmk01100]
pmk_M00082  Fatty acid biosynthesis, initiation [PATH:pmk01100]
pmk_M00083  Fatty acid biosynthesis, elongation [PATH:pmk01100]
pmk_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:pmk01100]
pmk_M00087  beta-Oxidation [PATH:pmk01100]
pmk_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pmk01100]
pmk_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pmk01100]
pmk_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pmk01100]
pmk_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:pmk01100]
pmk_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:pmk01100]
pmk_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pmk01100]
pmk_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pmk01100]
pmk_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pmk01100]
pmk_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pmk01100]
pmk_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pmk01100]
pmk_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:pmk01100]
pmk_M00149  Succinate dehydrogenase, prokaryotes [PATH:pmk01100]
pmk_M00151  Cytochrome bc1 complex respiratory unit [PATH:pmk01100]
pmk_M00155  Cytochrome c oxidase, prokaryotes [PATH:pmk01100]
pmk_M00156  Cytochrome c oxidase, cbb3-type [PATH:pmk01100]
pmk_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pmk01100]
pmk_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pmk01100]
pmk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmk01100]
pmk_M00417  Cytochrome o ubiquinol oxidase [PATH:pmk01100]
pmk_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pmk01100]
pmk_M00529  Denitrification, nitrate => nitrogen [PATH:pmk01100]
pmk_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:pmk01100]
pmk_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pmk01100]
pmk_M00551  Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:pmk01100]
pmk_M00555  Betaine biosynthesis, choline => betaine [PATH:pmk01100]
pmk_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:pmk01100]
pmk_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pmk01100]
pmk_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pmk01100]
pmk_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pmk01100]
pmk_M00621  Glycine cleavage system [PATH:pmk01100]
pmk_M00793  dTDP-L-rhamnose biosynthesis [PATH:pmk01100]
pmk_M00844  Arginine biosynthesis, ornithine => arginine [PATH:pmk01100]
pmk_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pmk01100]
pmk_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:pmk01100]
pmk_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pmk01100]
pmk_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pmk01100]
pmk_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pmk01100]
pmk_M00919  Ectoine degradation, ectoine => aspartate [PATH:pmk01100]
pmk_M00925  Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:pmk01100]
pmk_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pmk01100]
pmk_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:pmk01100]
pmk_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:pmk01100]
pmk_M00970  Proline degradation, proline => glutamate [PATH:pmk01100]
pmk_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:pmk01100]
Organism
Pseudomonas mendocina NK-01 [GN:pmk]
Related
pathway
pmk00010  Glycolysis / Gluconeogenesis
pmk00020  Citrate cycle (TCA cycle)
pmk00030  Pentose phosphate pathway
pmk00040  Pentose and glucuronate interconversions
pmk00051  Fructose and mannose metabolism
pmk00052  Galactose metabolism
pmk00053  Ascorbate and aldarate metabolism
pmk00061  Fatty acid biosynthesis
pmk00071  Fatty acid degradation
pmk00130  Ubiquinone and other terpenoid-quinone biosynthesis
pmk00190  Oxidative phosphorylation
pmk00220  Arginine biosynthesis
pmk00230  Purine metabolism
pmk00240  Pyrimidine metabolism
pmk00250  Alanine, aspartate and glutamate metabolism
pmk00260  Glycine, serine and threonine metabolism
pmk00261  Monobactam biosynthesis
pmk00270  Cysteine and methionine metabolism
pmk00280  Valine, leucine and isoleucine degradation
pmk00290  Valine, leucine and isoleucine biosynthesis
pmk00300  Lysine biosynthesis
pmk00310  Lysine degradation
pmk00330  Arginine and proline metabolism
pmk00332  Carbapenem biosynthesis
pmk00340  Histidine metabolism
pmk00350  Tyrosine metabolism
pmk00360  Phenylalanine metabolism
pmk00361  Chlorocyclohexane and chlorobenzene degradation
pmk00362  Benzoate degradation
pmk00364  Fluorobenzoate degradation
pmk00380  Tryptophan metabolism
pmk00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pmk00401  Novobiocin biosynthesis
pmk00410  beta-Alanine metabolism
pmk00430  Taurine and hypotaurine metabolism
pmk00440  Phosphonate and phosphinate metabolism
pmk00450  Selenocompound metabolism
pmk00460  Cyanoamino acid metabolism
pmk00470  D-Amino acid metabolism
pmk00480  Glutathione metabolism
pmk00500  Starch and sucrose metabolism
pmk00520  Amino sugar and nucleotide sugar metabolism
pmk00521  Streptomycin biosynthesis
pmk00523  Polyketide sugar unit biosynthesis
pmk00525  Acarbose and validamycin biosynthesis
pmk00540  Lipopolysaccharide biosynthesis
pmk00541  O-Antigen nucleotide sugar biosynthesis
pmk00543  Exopolysaccharide biosynthesis
pmk00550  Peptidoglycan biosynthesis
pmk00552  Teichoic acid biosynthesis
pmk00561  Glycerolipid metabolism
pmk00562  Inositol phosphate metabolism
pmk00564  Glycerophospholipid metabolism
pmk00565  Ether lipid metabolism
pmk00592  alpha-Linolenic acid metabolism
pmk00620  Pyruvate metabolism
pmk00622  Xylene degradation
pmk00623  Toluene degradation
pmk00625  Chloroalkane and chloroalkene degradation
pmk00626  Naphthalene degradation
pmk00627  Aminobenzoate degradation
pmk00630  Glyoxylate and dicarboxylate metabolism
pmk00633  Nitrotoluene degradation
pmk00640  Propanoate metabolism
pmk00643  Styrene degradation
pmk00650  Butanoate metabolism
pmk00660  C5-Branched dibasic acid metabolism
pmk00670  One carbon pool by folate
pmk00680  Methane metabolism
pmk00710  Carbon fixation by Calvin cycle
pmk00720  Other carbon fixation pathways
pmk00730  Thiamine metabolism
pmk00740  Riboflavin metabolism
pmk00750  Vitamin B6 metabolism
pmk00760  Nicotinate and nicotinamide metabolism
pmk00770  Pantothenate and CoA biosynthesis
pmk00780  Biotin metabolism
pmk00785  Lipoic acid metabolism
pmk00790  Folate biosynthesis
pmk00791  Atrazine degradation
pmk00860  Porphyrin metabolism
pmk00900  Terpenoid backbone biosynthesis
pmk00903  Limonene degradation
pmk00907  Pinene, camphor and geraniol degradation
pmk00910  Nitrogen metabolism
pmk00920  Sulfur metabolism
pmk00930  Caprolactam degradation
pmk00946  Degradation of flavonoids
pmk00999  Biosynthesis of various plant secondary metabolites
pmk01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
LinkDB

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