PATHWAY: rgi01100 Help Entry rgi01100                    Pathway                                 Name Metabolic pathways - Roseomonas gilardii Class BRITE hierarchy Pathway map rgi01100   Metabolic pathways Module rgi_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:rgi01100] rgi_M00002   Glycolysis, core module involving three-carbon compounds [PATH:rgi01100] rgi_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:rgi01100] rgi_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rgi01100] rgi_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:rgi01100] rgi_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:rgi01100] rgi_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rgi01100] rgi_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rgi01100] rgi_M00012   Glyoxylate cycle [PATH:rgi01100] rgi_M00015   Proline biosynthesis, glutamate => proline [PATH:rgi01100] rgi_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:rgi01100] rgi_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rgi01100] rgi_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:rgi01100] rgi_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:rgi01100] rgi_M00021   Cysteine biosynthesis, serine => cysteine [PATH:rgi01100] rgi_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:rgi01100] rgi_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:rgi01100] rgi_M00026   Histidine biosynthesis, PRPP => histidine [PATH:rgi01100] rgi_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:rgi01100] rgi_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rgi01100] rgi_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rgi01100] rgi_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rgi01100] rgi_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rgi01100] rgi_M00082   Fatty acid biosynthesis, initiation [PATH:rgi01100] rgi_M00083   Fatty acid biosynthesis, elongation [PATH:rgi01100] rgi_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:rgi01100] rgi_M00087   beta-Oxidation [PATH:rgi01100] rgi_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:rgi01100] rgi_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:rgi01100] rgi_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:rgi01100] rgi_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:rgi01100] rgi_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:rgi01100] rgi_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:rgi01100] rgi_M00140   C1-unit interconversion, prokaryotes [PATH:rgi01100] rgi_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:rgi01100] rgi_M00151   Cytochrome bc1 complex respiratory unit [PATH:rgi01100] rgi_M00155   Cytochrome c oxidase, prokaryotes [PATH:rgi01100] rgi_M00168   CAM (Crassulacean acid metabolism), dark [PATH:rgi01100] rgi_M00169   CAM (Crassulacean acid metabolism), light [PATH:rgi01100] rgi_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rgi01100] rgi_M00417   Cytochrome o ubiquinol oxidase [PATH:rgi01100] rgi_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:rgi01100] rgi_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:rgi01100] rgi_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:rgi01100] rgi_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:rgi01100] rgi_M00565   Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:rgi01100] rgi_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:rgi01100] rgi_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:rgi01100] rgi_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:rgi01100] rgi_M00621   Glycine cleavage system [PATH:rgi01100] rgi_M00793   dTDP-L-rhamnose biosynthesis [PATH:rgi01100] rgi_M00844   Arginine biosynthesis, ornithine => arginine [PATH:rgi01100] rgi_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:rgi01100] rgi_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:rgi01100] rgi_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:rgi01100] rgi_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:rgi01100] rgi_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rgi01100] rgi_M00939   Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:rgi01100] rgi_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:rgi01100] rgi_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:rgi01100] rgi_M00970   Proline degradation, proline => glutamate [PATH:rgi01100] Organism Roseomonas gilardii [GN:rgi] Related pathway rgi00010   Glycolysis / Gluconeogenesis rgi00020   Citrate cycle (TCA cycle) rgi00030   Pentose phosphate pathway rgi00040   Pentose and glucuronate interconversions rgi00051   Fructose and mannose metabolism rgi00052   Galactose metabolism rgi00053   Ascorbate and aldarate metabolism rgi00061   Fatty acid biosynthesis rgi00071   Fatty acid degradation rgi00074   Mycolic acid biosynthesis rgi00130   Ubiquinone and other terpenoid-quinone biosynthesis rgi00190   Oxidative phosphorylation rgi00220   Arginine biosynthesis rgi00230   Purine metabolism rgi00240   Pyrimidine metabolism rgi00250   Alanine, aspartate and glutamate metabolism rgi00260   Glycine, serine and threonine metabolism rgi00261   Monobactam biosynthesis rgi00270   Cysteine and methionine metabolism rgi00280   Valine, leucine and isoleucine degradation rgi00290   Valine, leucine and isoleucine biosynthesis rgi00300   Lysine biosynthesis rgi00310   Lysine degradation rgi00311   Penicillin and cephalosporin biosynthesis rgi00330   Arginine and proline metabolism rgi00332   Carbapenem biosynthesis rgi00340   Histidine metabolism rgi00350   Tyrosine metabolism rgi00360   Phenylalanine metabolism rgi00361   Chlorocyclohexane and chlorobenzene degradation rgi00362   Benzoate degradation rgi00364   Fluorobenzoate degradation rgi00380   Tryptophan metabolism rgi00400   Phenylalanine, tyrosine and tryptophan biosynthesis rgi00401   Novobiocin biosynthesis rgi00410   beta-Alanine metabolism rgi00430   Taurine and hypotaurine metabolism rgi00440   Phosphonate and phosphinate metabolism rgi00450   Selenocompound metabolism rgi00460   Cyanoamino acid metabolism rgi00470   D-Amino acid metabolism rgi00480   Glutathione metabolism rgi00500   Starch and sucrose metabolism rgi00520   Amino sugar and nucleotide sugar metabolism rgi00521   Streptomycin biosynthesis rgi00523   Polyketide sugar unit biosynthesis rgi00525   Acarbose and validamycin biosynthesis rgi00540   Lipopolysaccharide biosynthesis rgi00541   O-Antigen nucleotide sugar biosynthesis rgi00543   Exopolysaccharide biosynthesis rgi00550   Peptidoglycan biosynthesis rgi00552   Teichoic acid biosynthesis rgi00561   Glycerolipid metabolism rgi00562   Inositol phosphate metabolism rgi00564   Glycerophospholipid metabolism rgi00592   alpha-Linolenic acid metabolism rgi00600   Sphingolipid metabolism rgi00620   Pyruvate metabolism rgi00621   Dioxin degradation rgi00622   Xylene degradation rgi00623   Toluene degradation rgi00624   Polycyclic aromatic hydrocarbon degradation rgi00625   Chloroalkane and chloroalkene degradation rgi00626   Naphthalene degradation rgi00627   Aminobenzoate degradation rgi00630   Glyoxylate and dicarboxylate metabolism rgi00640   Propanoate metabolism rgi00643   Styrene degradation rgi00650   Butanoate metabolism rgi00660   C5-Branched dibasic acid metabolism rgi00670   One carbon pool by folate rgi00680   Methane metabolism rgi00710   Carbon fixation by Calvin cycle rgi00720   Other carbon fixation pathways rgi00730   Thiamine metabolism rgi00740   Riboflavin metabolism rgi00750   Vitamin B6 metabolism rgi00760   Nicotinate and nicotinamide metabolism rgi00770   Pantothenate and CoA biosynthesis rgi00780   Biotin metabolism rgi00785   Lipoic acid metabolism rgi00790   Folate biosynthesis rgi00860   Porphyrin metabolism rgi00900   Terpenoid backbone biosynthesis rgi00906   Carotenoid biosynthesis rgi00907   Pinene, camphor and geraniol degradation rgi00909   Sesquiterpenoid and triterpenoid biosynthesis rgi00910   Nitrogen metabolism rgi00920   Sulfur metabolism rgi00930   Caprolactam degradation rgi00996   Biosynthesis of various alkaloids rgi00998   Biosynthesis of various antibiotics rgi00999   Biosynthesis of various plant secondary metabolites rgi01040   Biosynthesis of unsaturated fatty acids rgi01053   Biosynthesis of siderophore group nonribosomal peptides rgi01055   Biosynthesis of vancomycin group antibiotics KO pathway ko01100     LinkDB All DBs

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