PATHWAY: rry01100 Help Entry rry01100                    Pathway                                 Name Metabolic pathways - Rathayibacter rathayi Class BRITE hierarchy Pathway map rry01100   Metabolic pathways Module rry_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:rry01100] rry_M00002   Glycolysis, core module involving three-carbon compounds [PATH:rry01100] rry_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rry01100] rry_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:rry01100] rry_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:rry01100] rry_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:rry01100] rry_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rry01100] rry_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rry01100] rry_M00015   Proline biosynthesis, glutamate => proline [PATH:rry01100] rry_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:rry01100] rry_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rry01100] rry_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:rry01100] rry_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:rry01100] rry_M00021   Cysteine biosynthesis, serine => cysteine [PATH:rry01100] rry_M00026   Histidine biosynthesis, PRPP => histidine [PATH:rry01100] rry_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:rry01100] rry_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rry01100] rry_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rry01100] rry_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rry01100] rry_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rry01100] rry_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:rry01100] rry_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:rry01100] rry_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:rry01100] rry_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:rry01100] rry_M00149   Succinate dehydrogenase, prokaryotes [PATH:rry01100] rry_M00151   Cytochrome bc1 complex respiratory unit [PATH:rry01100] rry_M00155   Cytochrome c oxidase, prokaryotes [PATH:rry01100] rry_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:rry01100] rry_M00168   CAM (Crassulacean acid metabolism), dark [PATH:rry01100] rry_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rry01100] rry_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:rry01100] rry_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:rry01100] rry_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:rry01100] rry_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:rry01100] rry_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:rry01100] rry_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:rry01100] rry_M00621   Glycine cleavage system [PATH:rry01100] rry_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:rry01100] rry_M00793   dTDP-L-rhamnose biosynthesis [PATH:rry01100] rry_M00844   Arginine biosynthesis, ornithine => arginine [PATH:rry01100] rry_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:rry01100] rry_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:rry01100] rry_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:rry01100] rry_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:rry01100] rry_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:rry01100] rry_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rry01100] rry_M00970   Proline degradation, proline => glutamate [PATH:rry01100] Organism Rathayibacter rathayi [GN:rry] Related pathway rry00010   Glycolysis / Gluconeogenesis rry00020   Citrate cycle (TCA cycle) rry00030   Pentose phosphate pathway rry00040   Pentose and glucuronate interconversions rry00051   Fructose and mannose metabolism rry00052   Galactose metabolism rry00053   Ascorbate and aldarate metabolism rry00061   Fatty acid biosynthesis rry00071   Fatty acid degradation rry00130   Ubiquinone and other terpenoid-quinone biosynthesis rry00190   Oxidative phosphorylation rry00220   Arginine biosynthesis rry00230   Purine metabolism rry00240   Pyrimidine metabolism rry00250   Alanine, aspartate and glutamate metabolism rry00260   Glycine, serine and threonine metabolism rry00261   Monobactam biosynthesis rry00270   Cysteine and methionine metabolism rry00280   Valine, leucine and isoleucine degradation rry00290   Valine, leucine and isoleucine biosynthesis rry00300   Lysine biosynthesis rry00310   Lysine degradation rry00311   Penicillin and cephalosporin biosynthesis rry00330   Arginine and proline metabolism rry00332   Carbapenem biosynthesis rry00340   Histidine metabolism rry00350   Tyrosine metabolism rry00360   Phenylalanine metabolism rry00361   Chlorocyclohexane and chlorobenzene degradation rry00362   Benzoate degradation rry00364   Fluorobenzoate degradation rry00380   Tryptophan metabolism rry00400   Phenylalanine, tyrosine and tryptophan biosynthesis rry00401   Novobiocin biosynthesis rry00410   beta-Alanine metabolism rry00430   Taurine and hypotaurine metabolism rry00450   Selenocompound metabolism rry00460   Cyanoamino acid metabolism rry00470   D-Amino acid metabolism rry00480   Glutathione metabolism rry00500   Starch and sucrose metabolism rry00514   Other types of O-glycan biosynthesis rry00515   Mannose type O-glycan biosynthesis rry00520   Amino sugar and nucleotide sugar metabolism rry00521   Streptomycin biosynthesis rry00523   Polyketide sugar unit biosynthesis rry00525   Acarbose and validamycin biosynthesis rry00540   Lipopolysaccharide biosynthesis rry00541   O-Antigen nucleotide sugar biosynthesis rry00542   O-Antigen repeat unit biosynthesis rry00543   Exopolysaccharide biosynthesis rry00550   Peptidoglycan biosynthesis rry00552   Teichoic acid biosynthesis rry00561   Glycerolipid metabolism rry00562   Inositol phosphate metabolism rry00564   Glycerophospholipid metabolism rry00592   alpha-Linolenic acid metabolism rry00600   Sphingolipid metabolism rry00620   Pyruvate metabolism rry00621   Dioxin degradation rry00622   Xylene degradation rry00623   Toluene degradation rry00630   Glyoxylate and dicarboxylate metabolism rry00633   Nitrotoluene degradation rry00640   Propanoate metabolism rry00643   Styrene degradation rry00650   Butanoate metabolism rry00660   C5-Branched dibasic acid metabolism rry00670   One carbon pool by folate rry00680   Methane metabolism rry00710   Carbon fixation by Calvin cycle rry00720   Other carbon fixation pathways rry00730   Thiamine metabolism rry00740   Riboflavin metabolism rry00750   Vitamin B6 metabolism rry00760   Nicotinate and nicotinamide metabolism rry00770   Pantothenate and CoA biosynthesis rry00780   Biotin metabolism rry00785   Lipoic acid metabolism rry00790   Folate biosynthesis rry00860   Porphyrin metabolism rry00900   Terpenoid backbone biosynthesis rry00910   Nitrogen metabolism rry00920   Sulfur metabolism rry00946   Degradation of flavonoids rry00999   Biosynthesis of various plant secondary metabolites rry01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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