PATHWAY: scyp01100 Help Entry scyp01100                   Pathway                                 Name Metabolic pathways - Shewanella cyperi Class BRITE hierarchy Pathway map scyp01100   Metabolic pathways Module scyp_M00002   Glycolysis, core module involving three-carbon compounds [PATH:scyp01100] scyp_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scyp01100] scyp_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:scyp01100] scyp_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:scyp01100] scyp_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:scyp01100] scyp_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:scyp01100] scyp_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:scyp01100] scyp_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:scyp01100] scyp_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scyp01100] scyp_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scyp01100] scyp_M00012   Glyoxylate cycle [PATH:scyp01100] scyp_M00015   Proline biosynthesis, glutamate => proline [PATH:scyp01100] scyp_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:scyp01100] scyp_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:scyp01100] scyp_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:scyp01100] scyp_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:scyp01100] scyp_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:scyp01100] scyp_M00021   Cysteine biosynthesis, serine => cysteine [PATH:scyp01100] scyp_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:scyp01100] scyp_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:scyp01100] scyp_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:scyp01100] scyp_M00026   Histidine biosynthesis, PRPP => histidine [PATH:scyp01100] scyp_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:scyp01100] scyp_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:scyp01100] scyp_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:scyp01100] scyp_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:scyp01100] scyp_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:scyp01100] scyp_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:scyp01100] scyp_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:scyp01100] scyp_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:scyp01100] scyp_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:scyp01100] scyp_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:scyp01100] scyp_M00063   CMP-KDO biosynthesis [PATH:scyp01100] scyp_M00083   Fatty acid biosynthesis, elongation [PATH:scyp01100] scyp_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:scyp01100] scyp_M00087   beta-Oxidation [PATH:scyp01100] scyp_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:scyp01100] scyp_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:scyp01100] scyp_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:scyp01100] scyp_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:scyp01100] scyp_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:scyp01100] scyp_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:scyp01100] scyp_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:scyp01100] scyp_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:scyp01100] scyp_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:scyp01100] scyp_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:scyp01100] scyp_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:scyp01100] scyp_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:scyp01100] scyp_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:scyp01100] scyp_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:scyp01100] scyp_M00140   C1-unit interconversion, prokaryotes [PATH:scyp01100] scyp_M00149   Succinate dehydrogenase, prokaryotes [PATH:scyp01100] scyp_M00151   Cytochrome bc1 complex respiratory unit [PATH:scyp01100] scyp_M00155   Cytochrome c oxidase, prokaryotes [PATH:scyp01100] scyp_M00156   Cytochrome c oxidase, cbb3-type [PATH:scyp01100] scyp_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:scyp01100] scyp_M00168   CAM (Crassulacean acid metabolism), dark [PATH:scyp01100] scyp_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:scyp01100] scyp_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scyp01100] scyp_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:scyp01100] scyp_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:scyp01100] scyp_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:scyp01100] scyp_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:scyp01100] scyp_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:scyp01100] scyp_M00621   Glycine cleavage system [PATH:scyp01100] scyp_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:scyp01100] scyp_M00793   dTDP-L-rhamnose biosynthesis [PATH:scyp01100] scyp_M00844   Arginine biosynthesis, ornithine => arginine [PATH:scyp01100] scyp_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:scyp01100] scyp_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:scyp01100] scyp_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:scyp01100] scyp_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:scyp01100] scyp_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:scyp01100] scyp_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:scyp01100] scyp_M00970   Proline degradation, proline => glutamate [PATH:scyp01100] Organism Shewanella cyperi [GN:scyp] Related pathway scyp00010   Glycolysis / Gluconeogenesis scyp00020   Citrate cycle (TCA cycle) scyp00030   Pentose phosphate pathway scyp00040   Pentose and glucuronate interconversions scyp00051   Fructose and mannose metabolism scyp00052   Galactose metabolism scyp00053   Ascorbate and aldarate metabolism scyp00061   Fatty acid biosynthesis scyp00071   Fatty acid degradation scyp00130   Ubiquinone and other terpenoid-quinone biosynthesis scyp00190   Oxidative phosphorylation scyp00220   Arginine biosynthesis scyp00230   Purine metabolism scyp00240   Pyrimidine metabolism scyp00250   Alanine, aspartate and glutamate metabolism scyp00260   Glycine, serine and threonine metabolism scyp00261   Monobactam biosynthesis scyp00270   Cysteine and methionine metabolism scyp00280   Valine, leucine and isoleucine degradation scyp00290   Valine, leucine and isoleucine biosynthesis scyp00300   Lysine biosynthesis scyp00310   Lysine degradation scyp00330   Arginine and proline metabolism scyp00332   Carbapenem biosynthesis scyp00340   Histidine metabolism scyp00350   Tyrosine metabolism scyp00360   Phenylalanine metabolism scyp00361   Chlorocyclohexane and chlorobenzene degradation scyp00362   Benzoate degradation scyp00364   Fluorobenzoate degradation scyp00380   Tryptophan metabolism scyp00400   Phenylalanine, tyrosine and tryptophan biosynthesis scyp00401   Novobiocin biosynthesis scyp00410   beta-Alanine metabolism scyp00430   Taurine and hypotaurine metabolism scyp00450   Selenocompound metabolism scyp00460   Cyanoamino acid metabolism scyp00470   D-Amino acid metabolism scyp00480   Glutathione metabolism scyp00500   Starch and sucrose metabolism scyp00511   Other glycan degradation scyp00520   Amino sugar and nucleotide sugar metabolism scyp00521   Streptomycin biosynthesis scyp00523   Polyketide sugar unit biosynthesis scyp00525   Acarbose and validamycin biosynthesis scyp00540   Lipopolysaccharide biosynthesis scyp00541   O-Antigen nucleotide sugar biosynthesis scyp00542   O-Antigen repeat unit biosynthesis scyp00543   Exopolysaccharide biosynthesis scyp00550   Peptidoglycan biosynthesis scyp00552   Teichoic acid biosynthesis scyp00561   Glycerolipid metabolism scyp00562   Inositol phosphate metabolism scyp00564   Glycerophospholipid metabolism scyp00565   Ether lipid metabolism scyp00590   Arachidonic acid metabolism scyp00592   alpha-Linolenic acid metabolism scyp00600   Sphingolipid metabolism scyp00620   Pyruvate metabolism scyp00621   Dioxin degradation scyp00622   Xylene degradation scyp00623   Toluene degradation scyp00625   Chloroalkane and chloroalkene degradation scyp00626   Naphthalene degradation scyp00627   Aminobenzoate degradation scyp00630   Glyoxylate and dicarboxylate metabolism scyp00633   Nitrotoluene degradation scyp00640   Propanoate metabolism scyp00643   Styrene degradation scyp00650   Butanoate metabolism scyp00660   C5-Branched dibasic acid metabolism scyp00670   One carbon pool by folate scyp00680   Methane metabolism scyp00710   Carbon fixation by Calvin cycle scyp00720   Other carbon fixation pathways scyp00730   Thiamine metabolism scyp00740   Riboflavin metabolism scyp00750   Vitamin B6 metabolism scyp00760   Nicotinate and nicotinamide metabolism scyp00770   Pantothenate and CoA biosynthesis scyp00780   Biotin metabolism scyp00785   Lipoic acid metabolism scyp00790   Folate biosynthesis scyp00860   Porphyrin metabolism scyp00900   Terpenoid backbone biosynthesis scyp00907   Pinene, camphor and geraniol degradation scyp00910   Nitrogen metabolism scyp00920   Sulfur metabolism scyp00930   Caprolactam degradation scyp00946   Degradation of flavonoids scyp00999   Biosynthesis of various plant secondary metabolites scyp01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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