PATHWAY: sers01100 Help Entry sers01100                   Pathway                                 Name Metabolic pathways - Serratia sp. SCBI Class BRITE hierarchy Pathway map sers01100   Metabolic pathways Module sers_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sers01100] sers_M00002   Glycolysis, core module involving three-carbon compounds [PATH:sers01100] sers_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sers01100] sers_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sers01100] sers_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:sers01100] sers_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sers01100] sers_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sers01100] sers_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sers01100] sers_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:sers01100] sers_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sers01100] sers_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sers01100] sers_M00012   Glyoxylate cycle [PATH:sers01100] sers_M00015   Proline biosynthesis, glutamate => proline [PATH:sers01100] sers_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:sers01100] sers_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:sers01100] sers_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sers01100] sers_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sers01100] sers_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:sers01100] sers_M00021   Cysteine biosynthesis, serine => cysteine [PATH:sers01100] sers_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sers01100] sers_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:sers01100] sers_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:sers01100] sers_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:sers01100] sers_M00026   Histidine biosynthesis, PRPP => histidine [PATH:sers01100] sers_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:sers01100] sers_M00034   Methionine salvage pathway [PATH:sers01100] sers_M00035   Methionine degradation [PATH:sers01100] sers_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sers01100] sers_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sers01100] sers_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sers01100] sers_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sers01100] sers_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sers01100] sers_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sers01100] sers_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:sers01100] sers_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sers01100] sers_M00063   CMP-KDO biosynthesis [PATH:sers01100] sers_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:sers01100] sers_M00082   Fatty acid biosynthesis, initiation [PATH:sers01100] sers_M00083   Fatty acid biosynthesis, elongation [PATH:sers01100] sers_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:sers01100] sers_M00087   beta-Oxidation [PATH:sers01100] sers_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sers01100] sers_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sers01100] sers_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:sers01100] sers_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:sers01100] sers_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:sers01100] sers_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:sers01100] sers_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:sers01100] sers_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:sers01100] sers_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sers01100] sers_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:sers01100] sers_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:sers01100] sers_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:sers01100] sers_M00136   GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:sers01100] sers_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:sers01100] sers_M00149   Succinate dehydrogenase, prokaryotes [PATH:sers01100] sers_M00150   Fumarate reductase, prokaryotes [PATH:sers01100] sers_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:sers01100] sers_M00168   CAM (Crassulacean acid metabolism), dark [PATH:sers01100] sers_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:sers01100] sers_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sers01100] sers_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:sers01100] sers_M00417   Cytochrome o ubiquinol oxidase [PATH:sers01100] sers_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sers01100] sers_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:sers01100] sers_M00533   Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:sers01100] sers_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:sers01100] sers_M00550   Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:sers01100] sers_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:sers01100] sers_M00555   Betaine biosynthesis, choline => betaine [PATH:sers01100] sers_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sers01100] sers_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:sers01100] sers_M00621   Glycine cleavage system [PATH:sers01100] sers_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:sers01100] sers_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:sers01100] sers_M00844   Arginine biosynthesis, ornithine => arginine [PATH:sers01100] sers_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:sers01100] sers_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:sers01100] sers_M00878   Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA [PATH:sers01100] sers_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:sers01100] sers_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sers01100] sers_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sers01100] sers_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:sers01100] sers_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sers01100] sers_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sers01100] sers_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:sers01100] sers_M00970   Proline degradation, proline => glutamate [PATH:sers01100] Organism Serratia sp. SCBI [GN:sers] Related pathway sers00010   Glycolysis / Gluconeogenesis sers00020   Citrate cycle (TCA cycle) sers00030   Pentose phosphate pathway sers00040   Pentose and glucuronate interconversions sers00051   Fructose and mannose metabolism sers00052   Galactose metabolism sers00053   Ascorbate and aldarate metabolism sers00061   Fatty acid biosynthesis sers00071   Fatty acid degradation sers00130   Ubiquinone and other terpenoid-quinone biosynthesis sers00190   Oxidative phosphorylation sers00220   Arginine biosynthesis sers00230   Purine metabolism sers00240   Pyrimidine metabolism sers00250   Alanine, aspartate and glutamate metabolism sers00260   Glycine, serine and threonine metabolism sers00261   Monobactam biosynthesis sers00270   Cysteine and methionine metabolism sers00280   Valine, leucine and isoleucine degradation sers00290   Valine, leucine and isoleucine biosynthesis sers00300   Lysine biosynthesis sers00310   Lysine degradation sers00330   Arginine and proline metabolism sers00332   Carbapenem biosynthesis sers00340   Histidine metabolism sers00350   Tyrosine metabolism sers00360   Phenylalanine metabolism sers00361   Chlorocyclohexane and chlorobenzene degradation sers00362   Benzoate degradation sers00364   Fluorobenzoate degradation sers00380   Tryptophan metabolism sers00400   Phenylalanine, tyrosine and tryptophan biosynthesis sers00401   Novobiocin biosynthesis sers00410   beta-Alanine metabolism sers00430   Taurine and hypotaurine metabolism sers00440   Phosphonate and phosphinate metabolism sers00450   Selenocompound metabolism sers00460   Cyanoamino acid metabolism sers00470   D-Amino acid metabolism sers00480   Glutathione metabolism sers00500   Starch and sucrose metabolism sers00511   Other glycan degradation sers00520   Amino sugar and nucleotide sugar metabolism sers00521   Streptomycin biosynthesis sers00523   Polyketide sugar unit biosynthesis sers00525   Acarbose and validamycin biosynthesis sers00540   Lipopolysaccharide biosynthesis sers00541   O-Antigen nucleotide sugar biosynthesis sers00542   O-Antigen repeat unit biosynthesis sers00543   Exopolysaccharide biosynthesis sers00550   Peptidoglycan biosynthesis sers00552   Teichoic acid biosynthesis sers00561   Glycerolipid metabolism sers00562   Inositol phosphate metabolism sers00564   Glycerophospholipid metabolism sers00592   alpha-Linolenic acid metabolism sers00600   Sphingolipid metabolism sers00620   Pyruvate metabolism sers00623   Toluene degradation sers00625   Chloroalkane and chloroalkene degradation sers00626   Naphthalene degradation sers00627   Aminobenzoate degradation sers00630   Glyoxylate and dicarboxylate metabolism sers00633   Nitrotoluene degradation sers00640   Propanoate metabolism sers00643   Styrene degradation sers00650   Butanoate metabolism sers00660   C5-Branched dibasic acid metabolism sers00670   One carbon pool by folate sers00680   Methane metabolism sers00710   Carbon fixation by Calvin cycle sers00720   Other carbon fixation pathways sers00730   Thiamine metabolism sers00740   Riboflavin metabolism sers00750   Vitamin B6 metabolism sers00760   Nicotinate and nicotinamide metabolism sers00770   Pantothenate and CoA biosynthesis sers00780   Biotin metabolism sers00785   Lipoic acid metabolism sers00790   Folate biosynthesis sers00791   Atrazine degradation sers00860   Porphyrin metabolism sers00900   Terpenoid backbone biosynthesis sers00907   Pinene, camphor and geraniol degradation sers00910   Nitrogen metabolism sers00920   Sulfur metabolism sers00930   Caprolactam degradation sers00946   Degradation of flavonoids sers00997   Biosynthesis of various other secondary metabolites sers00999   Biosynthesis of various plant secondary metabolites sers01040   Biosynthesis of unsaturated fatty acids sers01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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