KEGG   PATHWAY: sfl01100
Entry
sfl01100                    Pathway                                
Name
Metabolic pathways - Shigella flexneri 301 (serotype 2a)
Class
Pathway map
sfl01100  Metabolic pathways
sfl01100

Module
sfl_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sfl01100]
sfl_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sfl01100]
sfl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfl01100]
sfl_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sfl01100]
sfl_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sfl01100]
sfl_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sfl01100]
sfl_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sfl01100]
sfl_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sfl01100]
sfl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfl01100]
sfl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfl01100]
sfl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfl01100]
sfl_M00012  Glyoxylate cycle [PATH:sfl01100]
sfl_M00015  Proline biosynthesis, glutamate => proline [PATH:sfl01100]
sfl_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:sfl01100]
sfl_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sfl01100]
sfl_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sfl01100]
sfl_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:sfl01100]
sfl_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sfl01100]
sfl_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sfl01100]
sfl_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:sfl01100]
sfl_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:sfl01100]
sfl_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:sfl01100]
sfl_M00026  Histidine biosynthesis, PRPP => histidine [PATH:sfl01100]
sfl_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:sfl01100]
sfl_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sfl01100]
sfl_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sfl01100]
sfl_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sfl01100]
sfl_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sfl01100]
sfl_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sfl01100]
sfl_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sfl01100]
sfl_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:sfl01100]
sfl_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sfl01100]
sfl_M00063  CMP-KDO biosynthesis [PATH:sfl01100]
sfl_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:sfl01100]
sfl_M00082  Fatty acid biosynthesis, initiation [PATH:sfl01100]
sfl_M00083  Fatty acid biosynthesis, elongation [PATH:sfl01100]
sfl_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:sfl01100]
sfl_M00087  beta-Oxidation [PATH:sfl01100]
sfl_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sfl01100]
sfl_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:sfl01100]
sfl_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:sfl01100]
sfl_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:sfl01100]
sfl_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:sfl01100]
sfl_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:sfl01100]
sfl_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:sfl01100]
sfl_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:sfl01100]
sfl_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:sfl01100]
sfl_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sfl01100]
sfl_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:sfl01100]
sfl_M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:sfl01100]
sfl_M00136  GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:sfl01100]
sfl_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:sfl01100]
sfl_M00149  Succinate dehydrogenase, prokaryotes [PATH:sfl01100]
sfl_M00150  Fumarate reductase, prokaryotes [PATH:sfl01100]
sfl_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:sfl01100]
sfl_M00168  CAM (Crassulacean acid metabolism), dark [PATH:sfl01100]
sfl_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:sfl01100]
sfl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfl01100]
sfl_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:sfl01100]
sfl_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sfl01100]
sfl_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:sfl01100]
sfl_M00533  Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:sfl01100]
sfl_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:sfl01100]
sfl_M00550  Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:sfl01100]
sfl_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:sfl01100]
sfl_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sfl01100]
sfl_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:sfl01100]
sfl_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:sfl01100]
sfl_M00621  Glycine cleavage system [PATH:sfl01100]
sfl_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:sfl01100]
sfl_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:sfl01100]
sfl_M00793  dTDP-L-rhamnose biosynthesis [PATH:sfl01100]
sfl_M00844  Arginine biosynthesis, ornithine => arginine [PATH:sfl01100]
sfl_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:sfl01100]
sfl_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:sfl01100]
sfl_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:sfl01100]
sfl_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sfl01100]
sfl_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sfl01100]
sfl_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:sfl01100]
sfl_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sfl01100]
sfl_M00918  Aerobactin biosynthesis, lysine => aerobactin [PATH:sfl01100]
sfl_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sfl01100]
sfl_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:sfl01100]
sfl_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:sfl01100]
Organism
Shigella flexneri 301 (serotype 2a) [GN:sfl]
Related
pathway
sfl00010  Glycolysis / Gluconeogenesis
sfl00020  Citrate cycle (TCA cycle)
sfl00030  Pentose phosphate pathway
sfl00040  Pentose and glucuronate interconversions
sfl00051  Fructose and mannose metabolism
sfl00052  Galactose metabolism
sfl00053  Ascorbate and aldarate metabolism
sfl00061  Fatty acid biosynthesis
sfl00071  Fatty acid degradation
sfl00121  Secondary bile acid biosynthesis
sfl00130  Ubiquinone and other terpenoid-quinone biosynthesis
sfl00190  Oxidative phosphorylation
sfl00220  Arginine biosynthesis
sfl00230  Purine metabolism
sfl00240  Pyrimidine metabolism
sfl00250  Alanine, aspartate and glutamate metabolism
sfl00260  Glycine, serine and threonine metabolism
sfl00261  Monobactam biosynthesis
sfl00270  Cysteine and methionine metabolism
sfl00280  Valine, leucine and isoleucine degradation
sfl00290  Valine, leucine and isoleucine biosynthesis
sfl00300  Lysine biosynthesis
sfl00310  Lysine degradation
sfl00330  Arginine and proline metabolism
sfl00332  Carbapenem biosynthesis
sfl00340  Histidine metabolism
sfl00350  Tyrosine metabolism
sfl00360  Phenylalanine metabolism
sfl00361  Chlorocyclohexane and chlorobenzene degradation
sfl00362  Benzoate degradation
sfl00364  Fluorobenzoate degradation
sfl00380  Tryptophan metabolism
sfl00400  Phenylalanine, tyrosine and tryptophan biosynthesis
sfl00401  Novobiocin biosynthesis
sfl00410  beta-Alanine metabolism
sfl00430  Taurine and hypotaurine metabolism
sfl00450  Selenocompound metabolism
sfl00460  Cyanoamino acid metabolism
sfl00470  D-Amino acid metabolism
sfl00480  Glutathione metabolism
sfl00500  Starch and sucrose metabolism
sfl00511  Other glycan degradation
sfl00520  Amino sugar and nucleotide sugar metabolism
sfl00521  Streptomycin biosynthesis
sfl00523  Polyketide sugar unit biosynthesis
sfl00525  Acarbose and validamycin biosynthesis
sfl00540  Lipopolysaccharide biosynthesis
sfl00541  O-Antigen nucleotide sugar biosynthesis
sfl00542  O-Antigen repeat unit biosynthesis
sfl00543  Exopolysaccharide biosynthesis
sfl00550  Peptidoglycan biosynthesis
sfl00552  Teichoic acid biosynthesis
sfl00561  Glycerolipid metabolism
sfl00562  Inositol phosphate metabolism
sfl00564  Glycerophospholipid metabolism
sfl00565  Ether lipid metabolism
sfl00592  alpha-Linolenic acid metabolism
sfl00600  Sphingolipid metabolism
sfl00620  Pyruvate metabolism
sfl00623  Toluene degradation
sfl00625  Chloroalkane and chloroalkene degradation
sfl00626  Naphthalene degradation
sfl00627  Aminobenzoate degradation
sfl00630  Glyoxylate and dicarboxylate metabolism
sfl00633  Nitrotoluene degradation
sfl00640  Propanoate metabolism
sfl00650  Butanoate metabolism
sfl00660  C5-Branched dibasic acid metabolism
sfl00670  One carbon pool by folate
sfl00680  Methane metabolism
sfl00710  Carbon fixation by Calvin cycle
sfl00720  Other carbon fixation pathways
sfl00730  Thiamine metabolism
sfl00740  Riboflavin metabolism
sfl00750  Vitamin B6 metabolism
sfl00760  Nicotinate and nicotinamide metabolism
sfl00770  Pantothenate and CoA biosynthesis
sfl00780  Biotin metabolism
sfl00785  Lipoic acid metabolism
sfl00790  Folate biosynthesis
sfl00860  Porphyrin metabolism
sfl00900  Terpenoid backbone biosynthesis
sfl00907  Pinene, camphor and geraniol degradation
sfl00910  Nitrogen metabolism
sfl00920  Sulfur metabolism
sfl00930  Caprolactam degradation
sfl00946  Degradation of flavonoids
sfl00997  Biosynthesis of various other secondary metabolites
sfl00999  Biosynthesis of various plant secondary metabolites
sfl01040  Biosynthesis of unsaturated fatty acids
sfl01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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