KEGG   PATHWAY: sfs01100
Entry
sfs01100                    Pathway                                
Name
Metabolic pathways - Shigella flexneri Shi06HN006 (serotype Yv)
Class
Pathway map
sfs01100  Metabolic pathways
sfs01100

Module
sfs_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sfs01100]
sfs_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sfs01100]
sfs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfs01100]
sfs_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sfs01100]
sfs_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sfs01100]
sfs_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sfs01100]
sfs_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sfs01100]
sfs_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sfs01100]
sfs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfs01100]
sfs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfs01100]
sfs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfs01100]
sfs_M00012  Glyoxylate cycle [PATH:sfs01100]
sfs_M00015  Proline biosynthesis, glutamate => proline [PATH:sfs01100]
sfs_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:sfs01100]
sfs_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:sfs01100]
sfs_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sfs01100]
sfs_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sfs01100]
sfs_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:sfs01100]
sfs_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sfs01100]
sfs_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sfs01100]
sfs_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:sfs01100]
sfs_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:sfs01100]
sfs_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:sfs01100]
sfs_M00026  Histidine biosynthesis, PRPP => histidine [PATH:sfs01100]
sfs_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:sfs01100]
sfs_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:sfs01100]
sfs_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sfs01100]
sfs_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sfs01100]
sfs_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sfs01100]
sfs_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sfs01100]
sfs_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sfs01100]
sfs_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sfs01100]
sfs_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:sfs01100]
sfs_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sfs01100]
sfs_M00063  CMP-KDO biosynthesis [PATH:sfs01100]
sfs_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:sfs01100]
sfs_M00082  Fatty acid biosynthesis, initiation [PATH:sfs01100]
sfs_M00083  Fatty acid biosynthesis, elongation [PATH:sfs01100]
sfs_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:sfs01100]
sfs_M00087  beta-Oxidation [PATH:sfs01100]
sfs_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sfs01100]
sfs_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:sfs01100]
sfs_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sfs01100]
sfs_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:sfs01100]
sfs_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:sfs01100]
sfs_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:sfs01100]
sfs_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:sfs01100]
sfs_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:sfs01100]
sfs_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:sfs01100]
sfs_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:sfs01100]
sfs_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:sfs01100]
sfs_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sfs01100]
sfs_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:sfs01100]
sfs_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:sfs01100]
sfs_M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:sfs01100]
sfs_M00136  GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:sfs01100]
sfs_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:sfs01100]
sfs_M00149  Succinate dehydrogenase, prokaryotes [PATH:sfs01100]
sfs_M00150  Fumarate reductase, prokaryotes [PATH:sfs01100]
sfs_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:sfs01100]
sfs_M00168  CAM (Crassulacean acid metabolism), dark [PATH:sfs01100]
sfs_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:sfs01100]
sfs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfs01100]
sfs_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:sfs01100]
sfs_M00417  Cytochrome o ubiquinol oxidase [PATH:sfs01100]
sfs_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sfs01100]
sfs_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:sfs01100]
sfs_M00533  Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:sfs01100]
sfs_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:sfs01100]
sfs_M00550  Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:sfs01100]
sfs_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:sfs01100]
sfs_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:sfs01100]
sfs_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sfs01100]
sfs_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:sfs01100]
sfs_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:sfs01100]
sfs_M00621  Glycine cleavage system [PATH:sfs01100]
sfs_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:sfs01100]
sfs_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:sfs01100]
sfs_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:sfs01100]
sfs_M00793  dTDP-L-rhamnose biosynthesis [PATH:sfs01100]
sfs_M00844  Arginine biosynthesis, ornithine => arginine [PATH:sfs01100]
sfs_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:sfs01100]
sfs_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:sfs01100]
sfs_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:sfs01100]
sfs_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:sfs01100]
sfs_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sfs01100]
sfs_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sfs01100]
sfs_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:sfs01100]
sfs_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sfs01100]
sfs_M00918  Aerobactin biosynthesis, lysine => aerobactin [PATH:sfs01100]
sfs_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sfs01100]
sfs_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:sfs01100]
sfs_M00956  Lysine degradation, bacteria, L-lysine => succinate [PATH:sfs01100]
sfs_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:sfs01100]
Organism
Shigella flexneri Shi06HN006 (serotype Yv) [GN:sfs]
Related
pathway
sfs00010  Glycolysis / Gluconeogenesis
sfs00020  Citrate cycle (TCA cycle)
sfs00030  Pentose phosphate pathway
sfs00040  Pentose and glucuronate interconversions
sfs00051  Fructose and mannose metabolism
sfs00052  Galactose metabolism
sfs00053  Ascorbate and aldarate metabolism
sfs00061  Fatty acid biosynthesis
sfs00071  Fatty acid degradation
sfs00121  Secondary bile acid biosynthesis
sfs00130  Ubiquinone and other terpenoid-quinone biosynthesis
sfs00190  Oxidative phosphorylation
sfs00220  Arginine biosynthesis
sfs00230  Purine metabolism
sfs00240  Pyrimidine metabolism
sfs00250  Alanine, aspartate and glutamate metabolism
sfs00260  Glycine, serine and threonine metabolism
sfs00261  Monobactam biosynthesis
sfs00270  Cysteine and methionine metabolism
sfs00280  Valine, leucine and isoleucine degradation
sfs00290  Valine, leucine and isoleucine biosynthesis
sfs00300  Lysine biosynthesis
sfs00310  Lysine degradation
sfs00330  Arginine and proline metabolism
sfs00332  Carbapenem biosynthesis
sfs00340  Histidine metabolism
sfs00350  Tyrosine metabolism
sfs00360  Phenylalanine metabolism
sfs00361  Chlorocyclohexane and chlorobenzene degradation
sfs00362  Benzoate degradation
sfs00364  Fluorobenzoate degradation
sfs00380  Tryptophan metabolism
sfs00400  Phenylalanine, tyrosine and tryptophan biosynthesis
sfs00401  Novobiocin biosynthesis
sfs00410  beta-Alanine metabolism
sfs00430  Taurine and hypotaurine metabolism
sfs00450  Selenocompound metabolism
sfs00460  Cyanoamino acid metabolism
sfs00470  D-Amino acid metabolism
sfs00480  Glutathione metabolism
sfs00500  Starch and sucrose metabolism
sfs00511  Other glycan degradation
sfs00520  Amino sugar and nucleotide sugar metabolism
sfs00521  Streptomycin biosynthesis
sfs00523  Polyketide sugar unit biosynthesis
sfs00525  Acarbose and validamycin biosynthesis
sfs00540  Lipopolysaccharide biosynthesis
sfs00541  O-Antigen nucleotide sugar biosynthesis
sfs00542  O-Antigen repeat unit biosynthesis
sfs00543  Exopolysaccharide biosynthesis
sfs00550  Peptidoglycan biosynthesis
sfs00552  Teichoic acid biosynthesis
sfs00561  Glycerolipid metabolism
sfs00562  Inositol phosphate metabolism
sfs00564  Glycerophospholipid metabolism
sfs00565  Ether lipid metabolism
sfs00592  alpha-Linolenic acid metabolism
sfs00600  Sphingolipid metabolism
sfs00620  Pyruvate metabolism
sfs00623  Toluene degradation
sfs00625  Chloroalkane and chloroalkene degradation
sfs00626  Naphthalene degradation
sfs00627  Aminobenzoate degradation
sfs00630  Glyoxylate and dicarboxylate metabolism
sfs00633  Nitrotoluene degradation
sfs00640  Propanoate metabolism
sfs00650  Butanoate metabolism
sfs00660  C5-Branched dibasic acid metabolism
sfs00670  One carbon pool by folate
sfs00680  Methane metabolism
sfs00710  Carbon fixation by Calvin cycle
sfs00720  Other carbon fixation pathways
sfs00730  Thiamine metabolism
sfs00740  Riboflavin metabolism
sfs00750  Vitamin B6 metabolism
sfs00760  Nicotinate and nicotinamide metabolism
sfs00770  Pantothenate and CoA biosynthesis
sfs00780  Biotin metabolism
sfs00785  Lipoic acid metabolism
sfs00790  Folate biosynthesis
sfs00860  Porphyrin metabolism
sfs00900  Terpenoid backbone biosynthesis
sfs00907  Pinene, camphor and geraniol degradation
sfs00910  Nitrogen metabolism
sfs00920  Sulfur metabolism
sfs00930  Caprolactam degradation
sfs00946  Degradation of flavonoids
sfs00997  Biosynthesis of various other secondary metabolites
sfs00999  Biosynthesis of various plant secondary metabolites
sfs01040  Biosynthesis of unsaturated fatty acids
sfs01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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