KEGG   PATHWAY: shis01230
Entry
shis01230                   Pathway                                
Name
Biosynthesis of amino acids - Salvia hispanica (chia)
Description
This map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module for conversion of three-carbon compounds from glyceraldehyde-3P to pyruvate [MD:M00002], together with the pathways around serine and glycine. This KEGG module is the most conserved one in the KEGG MODULE database and is found in almost all the completely sequenced genomes. The extensions are the pathways containing the reaction modules RM001, RM033, RM032, and RM002 for biosynthesis of branched-chain amino acids (left) and basic amino acids (bottom), and the pathways for biosynthesis of histidine and aromatic amino acids (top right). It is interesting to note that the so-called essential amino acids that cannot be synthesized in human and other organisms generally appear in these extensions. Furthermore, the bottom extension of basic amino acids appears to be most divergent containing multiple pathways for lysine biosynthesis and multiple gene sets for arginine biosynthesis.
Class
Pathway map
shis01230  Biosynthesis of amino acids
shis01230

Module
shis_M00002  Glycolysis, core module involving three-carbon compounds [PATH:shis01230]
shis_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:shis01230]
shis_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:shis01230]
shis_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shis01230]
shis_M00015  Proline biosynthesis, glutamate => proline [PATH:shis01230]
shis_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:shis01230]
shis_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:shis01230]
shis_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:shis01230]
shis_M00021  Cysteine biosynthesis, serine => cysteine [PATH:shis01230]
shis_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:shis01230]
shis_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:shis01230]
shis_M00026  Histidine biosynthesis, PRPP => histidine [PATH:shis01230]
shis_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:shis01230]
shis_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:shis01230]
shis_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:shis01230]
shis_M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:shis01230]
shis_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:shis01230]
shis_M00844  Arginine biosynthesis, ornithine => arginine [PATH:shis01230]
shis_M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH:shis01230]
Organism
Salvia hispanica (chia) [GN:shis]
KO pathway
ko01230   
LinkDB

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