PATHWAY: shm01100 Help Entry shm01100                    Pathway                                 Name Metabolic pathways - Shewanella sp. MR-7 Class BRITE hierarchy Pathway map shm01100   Metabolic pathways Module shm_M00002   Glycolysis, core module involving three-carbon compounds [PATH:shm01100] shm_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:shm01100] shm_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:shm01100] shm_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:shm01100] shm_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:shm01100] shm_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:shm01100] shm_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:shm01100] shm_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:shm01100] shm_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shm01100] shm_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:shm01100] shm_M00012   Glyoxylate cycle [PATH:shm01100] shm_M00015   Proline biosynthesis, glutamate => proline [PATH:shm01100] shm_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:shm01100] shm_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:shm01100] shm_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:shm01100] shm_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:shm01100] shm_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:shm01100] shm_M00021   Cysteine biosynthesis, serine => cysteine [PATH:shm01100] shm_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:shm01100] shm_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:shm01100] shm_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:shm01100] shm_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:shm01100] shm_M00026   Histidine biosynthesis, PRPP => histidine [PATH:shm01100] shm_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:shm01100] shm_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:shm01100] shm_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:shm01100] shm_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:shm01100] shm_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:shm01100] shm_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:shm01100] shm_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:shm01100] shm_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:shm01100] shm_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:shm01100] shm_M00063   CMP-KDO biosynthesis [PATH:shm01100] shm_M00083   Fatty acid biosynthesis, elongation [PATH:shm01100] shm_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:shm01100] shm_M00087   beta-Oxidation [PATH:shm01100] shm_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:shm01100] shm_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:shm01100] shm_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:shm01100] shm_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:shm01100] shm_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:shm01100] shm_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:shm01100] shm_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:shm01100] shm_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:shm01100] shm_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:shm01100] shm_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:shm01100] shm_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:shm01100] shm_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:shm01100] shm_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:shm01100] shm_M00140   C1-unit interconversion, prokaryotes [PATH:shm01100] shm_M00149   Succinate dehydrogenase, prokaryotes [PATH:shm01100] shm_M00151   Cytochrome bc1 complex respiratory unit [PATH:shm01100] shm_M00155   Cytochrome c oxidase, prokaryotes [PATH:shm01100] shm_M00156   Cytochrome c oxidase, cbb3-type [PATH:shm01100] shm_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:shm01100] shm_M00168   CAM (Crassulacean acid metabolism), dark [PATH:shm01100] shm_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:shm01100] shm_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:shm01100] shm_M00417   Cytochrome o ubiquinol oxidase [PATH:shm01100] shm_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:shm01100] shm_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:shm01100] shm_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:shm01100] shm_M00621   Glycine cleavage system [PATH:shm01100] shm_M00793   dTDP-L-rhamnose biosynthesis [PATH:shm01100] shm_M00844   Arginine biosynthesis, ornithine => arginine [PATH:shm01100] shm_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:shm01100] shm_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:shm01100] shm_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:shm01100] shm_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:shm01100] shm_M00970   Proline degradation, proline => glutamate [PATH:shm01100] Organism Shewanella sp. MR-7 [GN:shm] Related pathway shm00010   Glycolysis / Gluconeogenesis shm00020   Citrate cycle (TCA cycle) shm00030   Pentose phosphate pathway shm00040   Pentose and glucuronate interconversions shm00051   Fructose and mannose metabolism shm00052   Galactose metabolism shm00053   Ascorbate and aldarate metabolism shm00061   Fatty acid biosynthesis shm00071   Fatty acid degradation shm00130   Ubiquinone and other terpenoid-quinone biosynthesis shm00190   Oxidative phosphorylation shm00220   Arginine biosynthesis shm00230   Purine metabolism shm00240   Pyrimidine metabolism shm00250   Alanine, aspartate and glutamate metabolism shm00260   Glycine, serine and threonine metabolism shm00261   Monobactam biosynthesis shm00270   Cysteine and methionine metabolism shm00280   Valine, leucine and isoleucine degradation shm00290   Valine, leucine and isoleucine biosynthesis shm00300   Lysine biosynthesis shm00310   Lysine degradation shm00330   Arginine and proline metabolism shm00332   Carbapenem biosynthesis shm00340   Histidine metabolism shm00350   Tyrosine metabolism shm00360   Phenylalanine metabolism shm00361   Chlorocyclohexane and chlorobenzene degradation shm00362   Benzoate degradation shm00364   Fluorobenzoate degradation shm00380   Tryptophan metabolism shm00400   Phenylalanine, tyrosine and tryptophan biosynthesis shm00401   Novobiocin biosynthesis shm00410   beta-Alanine metabolism shm00430   Taurine and hypotaurine metabolism shm00450   Selenocompound metabolism shm00460   Cyanoamino acid metabolism shm00470   D-Amino acid metabolism shm00480   Glutathione metabolism shm00500   Starch and sucrose metabolism shm00511   Other glycan degradation shm00520   Amino sugar and nucleotide sugar metabolism shm00521   Streptomycin biosynthesis shm00523   Polyketide sugar unit biosynthesis shm00525   Acarbose and validamycin biosynthesis shm00540   Lipopolysaccharide biosynthesis shm00541   O-Antigen nucleotide sugar biosynthesis shm00542   O-Antigen repeat unit biosynthesis shm00543   Exopolysaccharide biosynthesis shm00550   Peptidoglycan biosynthesis shm00552   Teichoic acid biosynthesis shm00561   Glycerolipid metabolism shm00562   Inositol phosphate metabolism shm00564   Glycerophospholipid metabolism shm00565   Ether lipid metabolism shm00590   Arachidonic acid metabolism shm00592   alpha-Linolenic acid metabolism shm00600   Sphingolipid metabolism shm00620   Pyruvate metabolism shm00623   Toluene degradation shm00625   Chloroalkane and chloroalkene degradation shm00626   Naphthalene degradation shm00627   Aminobenzoate degradation shm00630   Glyoxylate and dicarboxylate metabolism shm00633   Nitrotoluene degradation shm00640   Propanoate metabolism shm00643   Styrene degradation shm00650   Butanoate metabolism shm00660   C5-Branched dibasic acid metabolism shm00670   One carbon pool by folate shm00680   Methane metabolism shm00710   Carbon fixation by Calvin cycle shm00720   Other carbon fixation pathways shm00730   Thiamine metabolism shm00740   Riboflavin metabolism shm00750   Vitamin B6 metabolism shm00760   Nicotinate and nicotinamide metabolism shm00770   Pantothenate and CoA biosynthesis shm00780   Biotin metabolism shm00785   Lipoic acid metabolism shm00790   Folate biosynthesis shm00860   Porphyrin metabolism shm00900   Terpenoid backbone biosynthesis shm00903   Limonene degradation shm00907   Pinene, camphor and geraniol degradation shm00910   Nitrogen metabolism shm00920   Sulfur metabolism shm00930   Caprolactam degradation shm00999   Biosynthesis of various plant secondary metabolites shm01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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