PATHWAY: sja01100 Help Entry sja01100                    Pathway                                 Name Metabolic pathways - Shewanella japonica Class BRITE hierarchy Pathway map sja01100   Metabolic pathways Module sja_M00002   Glycolysis, core module involving three-carbon compounds [PATH:sja01100] sja_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sja01100] sja_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sja01100] sja_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:sja01100] sja_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sja01100] sja_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sja01100] sja_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sja01100] sja_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:sja01100] sja_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sja01100] sja_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sja01100] sja_M00012   Glyoxylate cycle [PATH:sja01100] sja_M00015   Proline biosynthesis, glutamate => proline [PATH:sja01100] sja_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:sja01100] sja_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:sja01100] sja_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sja01100] sja_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sja01100] sja_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:sja01100] sja_M00021   Cysteine biosynthesis, serine => cysteine [PATH:sja01100] sja_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sja01100] sja_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:sja01100] sja_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:sja01100] sja_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:sja01100] sja_M00026   Histidine biosynthesis, PRPP => histidine [PATH:sja01100] sja_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:sja01100] sja_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:sja01100] sja_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:sja01100] sja_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:sja01100] sja_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sja01100] sja_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sja01100] sja_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sja01100] sja_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sja01100] sja_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sja01100] sja_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:sja01100] sja_M00063   CMP-KDO biosynthesis [PATH:sja01100] sja_M00083   Fatty acid biosynthesis, elongation [PATH:sja01100] sja_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:sja01100] sja_M00087   beta-Oxidation [PATH:sja01100] sja_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sja01100] sja_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sja01100] sja_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:sja01100] sja_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:sja01100] sja_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:sja01100] sja_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:sja01100] sja_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:sja01100] sja_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:sja01100] sja_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:sja01100] sja_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:sja01100] sja_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sja01100] sja_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:sja01100] sja_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:sja01100] sja_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:sja01100] sja_M00149   Succinate dehydrogenase, prokaryotes [PATH:sja01100] sja_M00151   Cytochrome bc1 complex respiratory unit [PATH:sja01100] sja_M00155   Cytochrome c oxidase, prokaryotes [PATH:sja01100] sja_M00156   Cytochrome c oxidase, cbb3-type [PATH:sja01100] sja_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:sja01100] sja_M00168   CAM (Crassulacean acid metabolism), dark [PATH:sja01100] sja_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:sja01100] sja_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sja01100] sja_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sja01100] sja_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:sja01100] sja_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:sja01100] sja_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:sja01100] sja_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sja01100] sja_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:sja01100] sja_M00621   Glycine cleavage system [PATH:sja01100] sja_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:sja01100] sja_M00793   dTDP-L-rhamnose biosynthesis [PATH:sja01100] sja_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:sja01100] sja_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:sja01100] sja_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sja01100] sja_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sja01100] sja_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sja01100] sja_M00970   Proline degradation, proline => glutamate [PATH:sja01100] Organism Shewanella japonica [GN:sja] Related pathway sja00010   Glycolysis / Gluconeogenesis sja00020   Citrate cycle (TCA cycle) sja00030   Pentose phosphate pathway sja00040   Pentose and glucuronate interconversions sja00051   Fructose and mannose metabolism sja00052   Galactose metabolism sja00053   Ascorbate and aldarate metabolism sja00061   Fatty acid biosynthesis sja00071   Fatty acid degradation sja00130   Ubiquinone and other terpenoid-quinone biosynthesis sja00190   Oxidative phosphorylation sja00220   Arginine biosynthesis sja00230   Purine metabolism sja00240   Pyrimidine metabolism sja00250   Alanine, aspartate and glutamate metabolism sja00260   Glycine, serine and threonine metabolism sja00261   Monobactam biosynthesis sja00270   Cysteine and methionine metabolism sja00280   Valine, leucine and isoleucine degradation sja00290   Valine, leucine and isoleucine biosynthesis sja00300   Lysine biosynthesis sja00310   Lysine degradation sja00330   Arginine and proline metabolism sja00332   Carbapenem biosynthesis sja00340   Histidine metabolism sja00350   Tyrosine metabolism sja00360   Phenylalanine metabolism sja00361   Chlorocyclohexane and chlorobenzene degradation sja00362   Benzoate degradation sja00364   Fluorobenzoate degradation sja00380   Tryptophan metabolism sja00400   Phenylalanine, tyrosine and tryptophan biosynthesis sja00401   Novobiocin biosynthesis sja00410   beta-Alanine metabolism sja00430   Taurine and hypotaurine metabolism sja00450   Selenocompound metabolism sja00460   Cyanoamino acid metabolism sja00470   D-Amino acid metabolism sja00480   Glutathione metabolism sja00500   Starch and sucrose metabolism sja00511   Other glycan degradation sja00520   Amino sugar and nucleotide sugar metabolism sja00521   Streptomycin biosynthesis sja00523   Polyketide sugar unit biosynthesis sja00525   Acarbose and validamycin biosynthesis sja00540   Lipopolysaccharide biosynthesis sja00541   O-Antigen nucleotide sugar biosynthesis sja00543   Exopolysaccharide biosynthesis sja00550   Peptidoglycan biosynthesis sja00552   Teichoic acid biosynthesis sja00561   Glycerolipid metabolism sja00562   Inositol phosphate metabolism sja00564   Glycerophospholipid metabolism sja00565   Ether lipid metabolism sja00590   Arachidonic acid metabolism sja00592   alpha-Linolenic acid metabolism sja00600   Sphingolipid metabolism sja00620   Pyruvate metabolism sja00623   Toluene degradation sja00625   Chloroalkane and chloroalkene degradation sja00626   Naphthalene degradation sja00630   Glyoxylate and dicarboxylate metabolism sja00633   Nitrotoluene degradation sja00640   Propanoate metabolism sja00643   Styrene degradation sja00650   Butanoate metabolism sja00660   C5-Branched dibasic acid metabolism sja00670   One carbon pool by folate sja00680   Methane metabolism sja00710   Carbon fixation by Calvin cycle sja00720   Other carbon fixation pathways sja00730   Thiamine metabolism sja00740   Riboflavin metabolism sja00750   Vitamin B6 metabolism sja00760   Nicotinate and nicotinamide metabolism sja00770   Pantothenate and CoA biosynthesis sja00780   Biotin metabolism sja00785   Lipoic acid metabolism sja00790   Folate biosynthesis sja00860   Porphyrin metabolism sja00900   Terpenoid backbone biosynthesis sja00907   Pinene, camphor and geraniol degradation sja00910   Nitrogen metabolism sja00920   Sulfur metabolism sja00930   Caprolactam degradation sja00946   Degradation of flavonoids sja00999   Biosynthesis of various plant secondary metabolites sja01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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