PATHWAY: skh01100 Help Entry skh01100                    Pathway                                 Name Metabolic pathways - Shewanella khirikhana Class BRITE hierarchy Pathway map skh01100   Metabolic pathways Module skh_M00002   Glycolysis, core module involving three-carbon compounds [PATH:skh01100] skh_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:skh01100] skh_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:skh01100] skh_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:skh01100] skh_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:skh01100] skh_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:skh01100] skh_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:skh01100] skh_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:skh01100] skh_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:skh01100] skh_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:skh01100] skh_M00012   Glyoxylate cycle [PATH:skh01100] skh_M00015   Proline biosynthesis, glutamate => proline [PATH:skh01100] skh_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:skh01100] skh_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:skh01100] skh_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:skh01100] skh_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:skh01100] skh_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:skh01100] skh_M00021   Cysteine biosynthesis, serine => cysteine [PATH:skh01100] skh_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:skh01100] skh_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:skh01100] skh_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:skh01100] skh_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:skh01100] skh_M00026   Histidine biosynthesis, PRPP => histidine [PATH:skh01100] skh_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:skh01100] skh_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:skh01100] skh_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:skh01100] skh_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:skh01100] skh_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:skh01100] skh_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:skh01100] skh_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:skh01100] skh_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:skh01100] skh_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:skh01100] skh_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:skh01100] skh_M00063   CMP-KDO biosynthesis [PATH:skh01100] skh_M00083   Fatty acid biosynthesis, elongation [PATH:skh01100] skh_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:skh01100] skh_M00087   beta-Oxidation [PATH:skh01100] skh_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:skh01100] skh_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:skh01100] skh_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:skh01100] skh_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:skh01100] skh_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:skh01100] skh_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:skh01100] skh_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:skh01100] skh_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:skh01100] skh_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:skh01100] skh_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:skh01100] skh_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:skh01100] skh_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:skh01100] skh_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:skh01100] skh_M00140   C1-unit interconversion, prokaryotes [PATH:skh01100] skh_M00149   Succinate dehydrogenase, prokaryotes [PATH:skh01100] skh_M00151   Cytochrome bc1 complex respiratory unit [PATH:skh01100] skh_M00155   Cytochrome c oxidase, prokaryotes [PATH:skh01100] skh_M00156   Cytochrome c oxidase, cbb3-type [PATH:skh01100] skh_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:skh01100] skh_M00168   CAM (Crassulacean acid metabolism), dark [PATH:skh01100] skh_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:skh01100] skh_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:skh01100] skh_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:skh01100] skh_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:skh01100] skh_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:skh01100] skh_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:skh01100] skh_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:skh01100] skh_M00621   Glycine cleavage system [PATH:skh01100] skh_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:skh01100] skh_M00793   dTDP-L-rhamnose biosynthesis [PATH:skh01100] skh_M00844   Arginine biosynthesis, ornithine => arginine [PATH:skh01100] skh_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:skh01100] skh_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:skh01100] skh_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:skh01100] skh_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:skh01100] skh_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:skh01100] skh_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:skh01100] skh_M00970   Proline degradation, proline => glutamate [PATH:skh01100] Organism Shewanella khirikhana [GN:skh] Related pathway skh00010   Glycolysis / Gluconeogenesis skh00020   Citrate cycle (TCA cycle) skh00030   Pentose phosphate pathway skh00040   Pentose and glucuronate interconversions skh00051   Fructose and mannose metabolism skh00052   Galactose metabolism skh00053   Ascorbate and aldarate metabolism skh00061   Fatty acid biosynthesis skh00071   Fatty acid degradation skh00074   Mycolic acid biosynthesis skh00121   Secondary bile acid biosynthesis skh00130   Ubiquinone and other terpenoid-quinone biosynthesis skh00190   Oxidative phosphorylation skh00220   Arginine biosynthesis skh00230   Purine metabolism skh00240   Pyrimidine metabolism skh00250   Alanine, aspartate and glutamate metabolism skh00260   Glycine, serine and threonine metabolism skh00261   Monobactam biosynthesis skh00270   Cysteine and methionine metabolism skh00280   Valine, leucine and isoleucine degradation skh00290   Valine, leucine and isoleucine biosynthesis skh00300   Lysine biosynthesis skh00310   Lysine degradation skh00330   Arginine and proline metabolism skh00332   Carbapenem biosynthesis skh00340   Histidine metabolism skh00350   Tyrosine metabolism skh00360   Phenylalanine metabolism skh00361   Chlorocyclohexane and chlorobenzene degradation skh00362   Benzoate degradation skh00364   Fluorobenzoate degradation skh00380   Tryptophan metabolism skh00400   Phenylalanine, tyrosine and tryptophan biosynthesis skh00401   Novobiocin biosynthesis skh00410   beta-Alanine metabolism skh00430   Taurine and hypotaurine metabolism skh00450   Selenocompound metabolism skh00460   Cyanoamino acid metabolism skh00470   D-Amino acid metabolism skh00480   Glutathione metabolism skh00500   Starch and sucrose metabolism skh00511   Other glycan degradation skh00520   Amino sugar and nucleotide sugar metabolism skh00521   Streptomycin biosynthesis skh00523   Polyketide sugar unit biosynthesis skh00525   Acarbose and validamycin biosynthesis skh00540   Lipopolysaccharide biosynthesis skh00541   O-Antigen nucleotide sugar biosynthesis skh00543   Exopolysaccharide biosynthesis skh00550   Peptidoglycan biosynthesis skh00552   Teichoic acid biosynthesis skh00561   Glycerolipid metabolism skh00562   Inositol phosphate metabolism skh00564   Glycerophospholipid metabolism skh00565   Ether lipid metabolism skh00590   Arachidonic acid metabolism skh00592   alpha-Linolenic acid metabolism skh00600   Sphingolipid metabolism skh00620   Pyruvate metabolism skh00623   Toluene degradation skh00625   Chloroalkane and chloroalkene degradation skh00626   Naphthalene degradation skh00627   Aminobenzoate degradation skh00630   Glyoxylate and dicarboxylate metabolism skh00633   Nitrotoluene degradation skh00640   Propanoate metabolism skh00643   Styrene degradation skh00650   Butanoate metabolism skh00660   C5-Branched dibasic acid metabolism skh00670   One carbon pool by folate skh00680   Methane metabolism skh00710   Carbon fixation by Calvin cycle skh00720   Other carbon fixation pathways skh00730   Thiamine metabolism skh00740   Riboflavin metabolism skh00750   Vitamin B6 metabolism skh00760   Nicotinate and nicotinamide metabolism skh00770   Pantothenate and CoA biosynthesis skh00780   Biotin metabolism skh00785   Lipoic acid metabolism skh00790   Folate biosynthesis skh00860   Porphyrin metabolism skh00900   Terpenoid backbone biosynthesis skh00903   Limonene degradation skh00907   Pinene, camphor and geraniol degradation skh00910   Nitrogen metabolism skh00920   Sulfur metabolism skh00930   Caprolactam degradation skh00946   Degradation of flavonoids skh00999   Biosynthesis of various plant secondary metabolites skh01040   Biosynthesis of unsaturated fatty acids skh01055   Biosynthesis of vancomycin group antibiotics KO pathway ko01100     LinkDB All DBs

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