KEGG   PATHWAY: sla04136
Entry
sla04136                    Pathway                                
Name
Autophagy - other - Serpula lacrymans
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
sla04136  Autophagy - other
sla04136

Other DBs
GO: 0006914
Organism
Serpula lacrymans [GN:sla]
Gene
SERLADRAFT_454001  hypothetical protein [KO:K07204]
SERLADRAFT_362618  TOR; phosphatidylinositol 3-kinase [KO:K07203] [EC:2.7.11.1]
SERLADRAFT_474086  hypothetical protein [KO:K08266]
SERLADRAFT_480015  hypothetical protein [KO:K19730]
SERLADRAFT_475869  hypothetical protein [KO:K17606]
SERLADRAFT_467271  hypothetical protein [KO:K04382] [EC:3.1.3.16]
SERLADRAFT_441495  putative transmembrane protein involved in formation of autophagic vesicles [KO:K17907]
SERLADRAFT_454231  ATG2; hypothetical protein [KO:K17906]
SERLADRAFT_353987  hypothetical protein [KO:K17908]
SERLADRAFT_466160  ATG6; autophagy protein [KO:K08334]
SERLADRAFT_369876  Vsp34; putative atypical/PIKK/PI3K protein kinase [KO:K00914] [EC:2.7.1.137]
SERLADRAFT_355396  hypothetical protein [KO:K08333] [EC:2.7.11.1]
SERLADRAFT_478136  ATG12; putative ubiquitin-like modifier [KO:K08336]
SERLADRAFT_464887  ATG5; autophagy-related protein [KO:K08339]
SERLADRAFT_355306  ATG7; hypothetical protein [KO:K08337]
SERLADRAFT_466603  ATR3; hypothetical protein [KO:K08343]
SERLADRAFT_450535  ATG4; cysteine protease required for autophagy [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

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