PATHWAY: slig01100 Help Entry slig01100                   Pathway                                 Name Metabolic pathways - Sodalis ligni Class BRITE hierarchy Pathway map slig01100   Metabolic pathways Module slig_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:slig01100] slig_M00002   Glycolysis, core module involving three-carbon compounds [PATH:slig01100] slig_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:slig01100] slig_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:slig01100] slig_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:slig01100] slig_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:slig01100] slig_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:slig01100] slig_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:slig01100] slig_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slig01100] slig_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slig01100] slig_M00015   Proline biosynthesis, glutamate => proline [PATH:slig01100] slig_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:slig01100] slig_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:slig01100] slig_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:slig01100] slig_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:slig01100] slig_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:slig01100] slig_M00021   Cysteine biosynthesis, serine => cysteine [PATH:slig01100] slig_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:slig01100] slig_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:slig01100] slig_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:slig01100] slig_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:slig01100] slig_M00034   Methionine salvage pathway [PATH:slig01100] slig_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:slig01100] slig_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:slig01100] slig_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:slig01100] slig_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:slig01100] slig_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:slig01100] slig_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:slig01100] slig_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:slig01100] slig_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:slig01100] slig_M00082   Fatty acid biosynthesis, initiation [PATH:slig01100] slig_M00083   Fatty acid biosynthesis, elongation [PATH:slig01100] slig_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:slig01100] slig_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:slig01100] slig_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:slig01100] slig_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:slig01100] slig_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:slig01100] slig_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:slig01100] slig_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:slig01100] slig_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:slig01100] slig_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:slig01100] slig_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:slig01100] slig_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:slig01100] slig_M00149   Succinate dehydrogenase, prokaryotes [PATH:slig01100] slig_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:slig01100] slig_M00168   CAM (Crassulacean acid metabolism), dark [PATH:slig01100] slig_M00175   Nitrogen fixation, nitrogen => ammonia [PATH:slig01100] slig_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:slig01100] slig_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slig01100] slig_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:slig01100] slig_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:slig01100] slig_M00417   Cytochrome o ubiquinol oxidase [PATH:slig01100] slig_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:slig01100] slig_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:slig01100] slig_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:slig01100] slig_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:slig01100] slig_M00565   Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:slig01100] slig_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:slig01100] slig_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:slig01100] slig_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:slig01100] slig_M00621   Glycine cleavage system [PATH:slig01100] slig_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:slig01100] slig_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:slig01100] slig_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:slig01100] slig_M00844   Arginine biosynthesis, ornithine => arginine [PATH:slig01100] slig_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:slig01100] slig_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:slig01100] slig_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:slig01100] slig_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:slig01100] slig_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:slig01100] slig_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:slig01100] slig_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:slig01100] slig_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:slig01100] Organism Sodalis ligni [GN:slig] Related pathway slig00010   Glycolysis / Gluconeogenesis slig00020   Citrate cycle (TCA cycle) slig00030   Pentose phosphate pathway slig00040   Pentose and glucuronate interconversions slig00051   Fructose and mannose metabolism slig00052   Galactose metabolism slig00053   Ascorbate and aldarate metabolism slig00061   Fatty acid biosynthesis slig00071   Fatty acid degradation slig00130   Ubiquinone and other terpenoid-quinone biosynthesis slig00190   Oxidative phosphorylation slig00220   Arginine biosynthesis slig00230   Purine metabolism slig00240   Pyrimidine metabolism slig00250   Alanine, aspartate and glutamate metabolism slig00260   Glycine, serine and threonine metabolism slig00261   Monobactam biosynthesis slig00270   Cysteine and methionine metabolism slig00280   Valine, leucine and isoleucine degradation slig00290   Valine, leucine and isoleucine biosynthesis slig00300   Lysine biosynthesis slig00310   Lysine degradation slig00330   Arginine and proline metabolism slig00332   Carbapenem biosynthesis slig00340   Histidine metabolism slig00350   Tyrosine metabolism slig00360   Phenylalanine metabolism slig00361   Chlorocyclohexane and chlorobenzene degradation slig00362   Benzoate degradation slig00364   Fluorobenzoate degradation slig00380   Tryptophan metabolism slig00400   Phenylalanine, tyrosine and tryptophan biosynthesis slig00401   Novobiocin biosynthesis slig00410   beta-Alanine metabolism slig00430   Taurine and hypotaurine metabolism slig00440   Phosphonate and phosphinate metabolism slig00450   Selenocompound metabolism slig00460   Cyanoamino acid metabolism slig00470   D-Amino acid metabolism slig00480   Glutathione metabolism slig00500   Starch and sucrose metabolism slig00511   Other glycan degradation slig00520   Amino sugar and nucleotide sugar metabolism slig00521   Streptomycin biosynthesis slig00523   Polyketide sugar unit biosynthesis slig00525   Acarbose and validamycin biosynthesis slig00540   Lipopolysaccharide biosynthesis slig00541   O-Antigen nucleotide sugar biosynthesis slig00542   O-Antigen repeat unit biosynthesis slig00543   Exopolysaccharide biosynthesis slig00550   Peptidoglycan biosynthesis slig00552   Teichoic acid biosynthesis slig00561   Glycerolipid metabolism slig00562   Inositol phosphate metabolism slig00564   Glycerophospholipid metabolism slig00565   Ether lipid metabolism slig00592   alpha-Linolenic acid metabolism slig00620   Pyruvate metabolism slig00623   Toluene degradation slig00625   Chloroalkane and chloroalkene degradation slig00626   Naphthalene degradation slig00627   Aminobenzoate degradation slig00630   Glyoxylate and dicarboxylate metabolism slig00633   Nitrotoluene degradation slig00640   Propanoate metabolism slig00643   Styrene degradation slig00650   Butanoate metabolism slig00660   C5-Branched dibasic acid metabolism slig00670   One carbon pool by folate slig00680   Methane metabolism slig00710   Carbon fixation by Calvin cycle slig00720   Other carbon fixation pathways slig00730   Thiamine metabolism slig00740   Riboflavin metabolism slig00750   Vitamin B6 metabolism slig00760   Nicotinate and nicotinamide metabolism slig00770   Pantothenate and CoA biosynthesis slig00780   Biotin metabolism slig00785   Lipoic acid metabolism slig00790   Folate biosynthesis slig00791   Atrazine degradation slig00860   Porphyrin metabolism slig00900   Terpenoid backbone biosynthesis slig00910   Nitrogen metabolism slig00920   Sulfur metabolism slig00946   Degradation of flavonoids slig00999   Biosynthesis of various plant secondary metabolites slig01040   Biosynthesis of unsaturated fatty acids slig01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

DBGET integrated database retrieval system