PATHWAY: slo01100 Help Entry slo01100                    Pathway                                 Name Metabolic pathways - Shewanella loihica Class BRITE hierarchy Pathway map slo01100   Metabolic pathways Module slo_M00002   Glycolysis, core module involving three-carbon compounds [PATH:slo01100] slo_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:slo01100] slo_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:slo01100] slo_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:slo01100] slo_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:slo01100] slo_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:slo01100] slo_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:slo01100] slo_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:slo01100] slo_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slo01100] slo_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:slo01100] slo_M00012   Glyoxylate cycle [PATH:slo01100] slo_M00015   Proline biosynthesis, glutamate => proline [PATH:slo01100] slo_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:slo01100] slo_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:slo01100] slo_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:slo01100] slo_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:slo01100] slo_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:slo01100] slo_M00021   Cysteine biosynthesis, serine => cysteine [PATH:slo01100] slo_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:slo01100] slo_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:slo01100] slo_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:slo01100] slo_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:slo01100] slo_M00026   Histidine biosynthesis, PRPP => histidine [PATH:slo01100] slo_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:slo01100] slo_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:slo01100] slo_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:slo01100] slo_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:slo01100] slo_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:slo01100] slo_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:slo01100] slo_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:slo01100] slo_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:slo01100] slo_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:slo01100] slo_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:slo01100] slo_M00063   CMP-KDO biosynthesis [PATH:slo01100] slo_M00083   Fatty acid biosynthesis, elongation [PATH:slo01100] slo_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:slo01100] slo_M00087   beta-Oxidation [PATH:slo01100] slo_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:slo01100] slo_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:slo01100] slo_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:slo01100] slo_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:slo01100] slo_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:slo01100] slo_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:slo01100] slo_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:slo01100] slo_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:slo01100] slo_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:slo01100] slo_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:slo01100] slo_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:slo01100] slo_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:slo01100] slo_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:slo01100] slo_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:slo01100] slo_M00140   C1-unit interconversion, prokaryotes [PATH:slo01100] slo_M00149   Succinate dehydrogenase, prokaryotes [PATH:slo01100] slo_M00151   Cytochrome bc1 complex respiratory unit [PATH:slo01100] slo_M00155   Cytochrome c oxidase, prokaryotes [PATH:slo01100] slo_M00156   Cytochrome c oxidase, cbb3-type [PATH:slo01100] slo_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:slo01100] slo_M00168   CAM (Crassulacean acid metabolism), dark [PATH:slo01100] slo_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:slo01100] slo_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slo01100] slo_M00417   Cytochrome o ubiquinol oxidase [PATH:slo01100] slo_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:slo01100] slo_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:slo01100] slo_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:slo01100] slo_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:slo01100] slo_M00621   Glycine cleavage system [PATH:slo01100] slo_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:slo01100] slo_M00793   dTDP-L-rhamnose biosynthesis [PATH:slo01100] slo_M00844   Arginine biosynthesis, ornithine => arginine [PATH:slo01100] slo_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:slo01100] slo_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:slo01100] slo_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:slo01100] slo_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:slo01100] slo_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:slo01100] slo_M00970   Proline degradation, proline => glutamate [PATH:slo01100] Organism Shewanella loihica [GN:slo] Related pathway slo00010   Glycolysis / Gluconeogenesis slo00020   Citrate cycle (TCA cycle) slo00030   Pentose phosphate pathway slo00040   Pentose and glucuronate interconversions slo00051   Fructose and mannose metabolism slo00052   Galactose metabolism slo00061   Fatty acid biosynthesis slo00071   Fatty acid degradation slo00130   Ubiquinone and other terpenoid-quinone biosynthesis slo00190   Oxidative phosphorylation slo00220   Arginine biosynthesis slo00230   Purine metabolism slo00240   Pyrimidine metabolism slo00250   Alanine, aspartate and glutamate metabolism slo00260   Glycine, serine and threonine metabolism slo00261   Monobactam biosynthesis slo00270   Cysteine and methionine metabolism slo00280   Valine, leucine and isoleucine degradation slo00290   Valine, leucine and isoleucine biosynthesis slo00300   Lysine biosynthesis slo00310   Lysine degradation slo00330   Arginine and proline metabolism slo00332   Carbapenem biosynthesis slo00340   Histidine metabolism slo00350   Tyrosine metabolism slo00360   Phenylalanine metabolism slo00361   Chlorocyclohexane and chlorobenzene degradation slo00362   Benzoate degradation slo00364   Fluorobenzoate degradation slo00380   Tryptophan metabolism slo00400   Phenylalanine, tyrosine and tryptophan biosynthesis slo00401   Novobiocin biosynthesis slo00410   beta-Alanine metabolism slo00430   Taurine and hypotaurine metabolism slo00450   Selenocompound metabolism slo00460   Cyanoamino acid metabolism slo00470   D-Amino acid metabolism slo00480   Glutathione metabolism slo00500   Starch and sucrose metabolism slo00511   Other glycan degradation slo00520   Amino sugar and nucleotide sugar metabolism slo00521   Streptomycin biosynthesis slo00523   Polyketide sugar unit biosynthesis slo00525   Acarbose and validamycin biosynthesis slo00540   Lipopolysaccharide biosynthesis slo00541   O-Antigen nucleotide sugar biosynthesis slo00542   O-Antigen repeat unit biosynthesis slo00543   Exopolysaccharide biosynthesis slo00550   Peptidoglycan biosynthesis slo00552   Teichoic acid biosynthesis slo00561   Glycerolipid metabolism slo00562   Inositol phosphate metabolism slo00564   Glycerophospholipid metabolism slo00565   Ether lipid metabolism slo00590   Arachidonic acid metabolism slo00592   alpha-Linolenic acid metabolism slo00600   Sphingolipid metabolism slo00620   Pyruvate metabolism slo00623   Toluene degradation slo00625   Chloroalkane and chloroalkene degradation slo00626   Naphthalene degradation slo00627   Aminobenzoate degradation slo00630   Glyoxylate and dicarboxylate metabolism slo00633   Nitrotoluene degradation slo00640   Propanoate metabolism slo00643   Styrene degradation slo00650   Butanoate metabolism slo00660   C5-Branched dibasic acid metabolism slo00670   One carbon pool by folate slo00680   Methane metabolism slo00710   Carbon fixation by Calvin cycle slo00720   Other carbon fixation pathways slo00730   Thiamine metabolism slo00740   Riboflavin metabolism slo00750   Vitamin B6 metabolism slo00760   Nicotinate and nicotinamide metabolism slo00770   Pantothenate and CoA biosynthesis slo00780   Biotin metabolism slo00785   Lipoic acid metabolism slo00790   Folate biosynthesis slo00860   Porphyrin metabolism slo00900   Terpenoid backbone biosynthesis slo00907   Pinene, camphor and geraniol degradation slo00910   Nitrogen metabolism slo00920   Sulfur metabolism slo00930   Caprolactam degradation slo00999   Biosynthesis of various plant secondary metabolites slo01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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