PATHWAY: smes01100 Help Entry smes01100                   Pathway                                 Name Metabolic pathways - Shewanella mesophila Class BRITE hierarchy Pathway map smes01100   Metabolic pathways Module smes_M00002   Glycolysis, core module involving three-carbon compounds [PATH:smes01100] smes_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smes01100] smes_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:smes01100] smes_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:smes01100] smes_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:smes01100] smes_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:smes01100] smes_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:smes01100] smes_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:smes01100] smes_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smes01100] smes_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smes01100] smes_M00012   Glyoxylate cycle [PATH:smes01100] smes_M00015   Proline biosynthesis, glutamate => proline [PATH:smes01100] smes_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:smes01100] smes_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:smes01100] smes_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:smes01100] smes_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:smes01100] smes_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:smes01100] smes_M00021   Cysteine biosynthesis, serine => cysteine [PATH:smes01100] smes_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:smes01100] smes_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:smes01100] smes_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:smes01100] smes_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:smes01100] smes_M00026   Histidine biosynthesis, PRPP => histidine [PATH:smes01100] smes_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:smes01100] smes_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:smes01100] smes_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:smes01100] smes_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:smes01100] smes_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:smes01100] smes_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:smes01100] smes_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:smes01100] smes_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:smes01100] smes_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:smes01100] smes_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:smes01100] smes_M00063   CMP-KDO biosynthesis [PATH:smes01100] smes_M00083   Fatty acid biosynthesis, elongation [PATH:smes01100] smes_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:smes01100] smes_M00087   beta-Oxidation [PATH:smes01100] smes_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:smes01100] smes_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:smes01100] smes_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:smes01100] smes_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:smes01100] smes_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:smes01100] smes_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:smes01100] smes_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:smes01100] smes_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:smes01100] smes_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:smes01100] smes_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:smes01100] smes_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:smes01100] smes_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:smes01100] smes_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:smes01100] smes_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:smes01100] smes_M00140   C1-unit interconversion, prokaryotes [PATH:smes01100] smes_M00149   Succinate dehydrogenase, prokaryotes [PATH:smes01100] smes_M00151   Cytochrome bc1 complex respiratory unit [PATH:smes01100] smes_M00155   Cytochrome c oxidase, prokaryotes [PATH:smes01100] smes_M00156   Cytochrome c oxidase, cbb3-type [PATH:smes01100] smes_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:smes01100] smes_M00168   CAM (Crassulacean acid metabolism), dark [PATH:smes01100] smes_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:smes01100] smes_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smes01100] smes_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:smes01100] smes_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:smes01100] smes_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:smes01100] smes_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:smes01100] smes_M00621   Glycine cleavage system [PATH:smes01100] smes_M00793   dTDP-L-rhamnose biosynthesis [PATH:smes01100] smes_M00844   Arginine biosynthesis, ornithine => arginine [PATH:smes01100] smes_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:smes01100] smes_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:smes01100] smes_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:smes01100] smes_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:smes01100] smes_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:smes01100] smes_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:smes01100] smes_M00970   Proline degradation, proline => glutamate [PATH:smes01100] Organism Shewanella mesophila [GN:smes] Related pathway smes00010   Glycolysis / Gluconeogenesis smes00020   Citrate cycle (TCA cycle) smes00030   Pentose phosphate pathway smes00040   Pentose and glucuronate interconversions smes00051   Fructose and mannose metabolism smes00052   Galactose metabolism smes00061   Fatty acid biosynthesis smes00071   Fatty acid degradation smes00130   Ubiquinone and other terpenoid-quinone biosynthesis smes00190   Oxidative phosphorylation smes00220   Arginine biosynthesis smes00230   Purine metabolism smes00240   Pyrimidine metabolism smes00250   Alanine, aspartate and glutamate metabolism smes00260   Glycine, serine and threonine metabolism smes00261   Monobactam biosynthesis smes00270   Cysteine and methionine metabolism smes00280   Valine, leucine and isoleucine degradation smes00290   Valine, leucine and isoleucine biosynthesis smes00300   Lysine biosynthesis smes00310   Lysine degradation smes00330   Arginine and proline metabolism smes00332   Carbapenem biosynthesis smes00340   Histidine metabolism smes00350   Tyrosine metabolism smes00360   Phenylalanine metabolism smes00361   Chlorocyclohexane and chlorobenzene degradation smes00362   Benzoate degradation smes00364   Fluorobenzoate degradation smes00380   Tryptophan metabolism smes00400   Phenylalanine, tyrosine and tryptophan biosynthesis smes00401   Novobiocin biosynthesis smes00410   beta-Alanine metabolism smes00430   Taurine and hypotaurine metabolism smes00450   Selenocompound metabolism smes00460   Cyanoamino acid metabolism smes00470   D-Amino acid metabolism smes00480   Glutathione metabolism smes00500   Starch and sucrose metabolism smes00511   Other glycan degradation smes00520   Amino sugar and nucleotide sugar metabolism smes00521   Streptomycin biosynthesis smes00523   Polyketide sugar unit biosynthesis smes00525   Acarbose and validamycin biosynthesis smes00540   Lipopolysaccharide biosynthesis smes00541   O-Antigen nucleotide sugar biosynthesis smes00542   O-Antigen repeat unit biosynthesis smes00543   Exopolysaccharide biosynthesis smes00550   Peptidoglycan biosynthesis smes00552   Teichoic acid biosynthesis smes00561   Glycerolipid metabolism smes00562   Inositol phosphate metabolism smes00564   Glycerophospholipid metabolism smes00565   Ether lipid metabolism smes00590   Arachidonic acid metabolism smes00592   alpha-Linolenic acid metabolism smes00600   Sphingolipid metabolism smes00620   Pyruvate metabolism smes00623   Toluene degradation smes00625   Chloroalkane and chloroalkene degradation smes00626   Naphthalene degradation smes00627   Aminobenzoate degradation smes00630   Glyoxylate and dicarboxylate metabolism smes00633   Nitrotoluene degradation smes00640   Propanoate metabolism smes00643   Styrene degradation smes00650   Butanoate metabolism smes00660   C5-Branched dibasic acid metabolism smes00670   One carbon pool by folate smes00680   Methane metabolism smes00730   Thiamine metabolism smes00740   Riboflavin metabolism smes00750   Vitamin B6 metabolism smes00760   Nicotinate and nicotinamide metabolism smes00770   Pantothenate and CoA biosynthesis smes00780   Biotin metabolism smes00785   Lipoic acid metabolism smes00790   Folate biosynthesis smes00860   Porphyrin metabolism smes00900   Terpenoid backbone biosynthesis smes00907   Pinene, camphor and geraniol degradation smes00910   Nitrogen metabolism smes00920   Sulfur metabolism smes00930   Caprolactam degradation smes00946   Degradation of flavonoids smes00999   Biosynthesis of various plant secondary metabolites smes01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

DBGET integrated database retrieval system