PATHWAY: soj01100 Help Entry soj01100                    Pathway                                 Name Metabolic pathways - Shinella oryzae Class BRITE hierarchy Pathway map soj01100   Metabolic pathways Module soj_M00002   Glycolysis, core module involving three-carbon compounds [PATH:soj01100] soj_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:soj01100] soj_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:soj01100] soj_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:soj01100] soj_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:soj01100] soj_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:soj01100] soj_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:soj01100] soj_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:soj01100] soj_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:soj01100] soj_M00012   Glyoxylate cycle [PATH:soj01100] soj_M00015   Proline biosynthesis, glutamate => proline [PATH:soj01100] soj_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:soj01100] soj_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:soj01100] soj_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:soj01100] soj_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:soj01100] soj_M00021   Cysteine biosynthesis, serine => cysteine [PATH:soj01100] soj_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:soj01100] soj_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:soj01100] soj_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:soj01100] soj_M00026   Histidine biosynthesis, PRPP => histidine [PATH:soj01100] soj_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:soj01100] soj_M00040   Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:soj01100] soj_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:soj01100] soj_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:soj01100] soj_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:soj01100] soj_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:soj01100] soj_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:soj01100] soj_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:soj01100] soj_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:soj01100] soj_M00082   Fatty acid biosynthesis, initiation [PATH:soj01100] soj_M00083   Fatty acid biosynthesis, elongation [PATH:soj01100] soj_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:soj01100] soj_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:soj01100] soj_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:soj01100] soj_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:soj01100] soj_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:soj01100] soj_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:soj01100] soj_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:soj01100] soj_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:soj01100] soj_M00140   C1-unit interconversion, prokaryotes [PATH:soj01100] soj_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:soj01100] soj_M00149   Succinate dehydrogenase, prokaryotes [PATH:soj01100] soj_M00151   Cytochrome bc1 complex respiratory unit [PATH:soj01100] soj_M00155   Cytochrome c oxidase, prokaryotes [PATH:soj01100] soj_M00156   Cytochrome c oxidase, cbb3-type [PATH:soj01100] soj_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:soj01100] soj_M00169   CAM (Crassulacean acid metabolism), light [PATH:soj01100] soj_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:soj01100] soj_M00417   Cytochrome o ubiquinol oxidase [PATH:soj01100] soj_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:soj01100] soj_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:soj01100] soj_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:soj01100] soj_M00555   Betaine biosynthesis, choline => betaine [PATH:soj01100] soj_M00565   Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:soj01100] soj_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:soj01100] soj_M00621   Glycine cleavage system [PATH:soj01100] soj_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:soj01100] soj_M00844   Arginine biosynthesis, ornithine => arginine [PATH:soj01100] soj_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:soj01100] soj_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:soj01100] soj_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:soj01100] soj_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:soj01100] soj_M00919   Ectoine degradation, ectoine => aspartate [PATH:soj01100] soj_M00925   Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:soj01100] soj_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:soj01100] soj_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:soj01100] soj_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:soj01100] soj_M00970   Proline degradation, proline => glutamate [PATH:soj01100] soj_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:soj01100] Organism Shinella oryzae [GN:soj] Related pathway soj00010   Glycolysis / Gluconeogenesis soj00020   Citrate cycle (TCA cycle) soj00030   Pentose phosphate pathway soj00040   Pentose and glucuronate interconversions soj00051   Fructose and mannose metabolism soj00052   Galactose metabolism soj00053   Ascorbate and aldarate metabolism soj00061   Fatty acid biosynthesis soj00071   Fatty acid degradation soj00074   Mycolic acid biosynthesis soj00130   Ubiquinone and other terpenoid-quinone biosynthesis soj00190   Oxidative phosphorylation soj00220   Arginine biosynthesis soj00230   Purine metabolism soj00240   Pyrimidine metabolism soj00250   Alanine, aspartate and glutamate metabolism soj00260   Glycine, serine and threonine metabolism soj00261   Monobactam biosynthesis soj00270   Cysteine and methionine metabolism soj00280   Valine, leucine and isoleucine degradation soj00290   Valine, leucine and isoleucine biosynthesis soj00300   Lysine biosynthesis soj00310   Lysine degradation soj00330   Arginine and proline metabolism soj00332   Carbapenem biosynthesis soj00340   Histidine metabolism soj00350   Tyrosine metabolism soj00360   Phenylalanine metabolism soj00361   Chlorocyclohexane and chlorobenzene degradation soj00362   Benzoate degradation soj00364   Fluorobenzoate degradation soj00365   Furfural degradation soj00380   Tryptophan metabolism soj00400   Phenylalanine, tyrosine and tryptophan biosynthesis soj00401   Novobiocin biosynthesis soj00410   beta-Alanine metabolism soj00430   Taurine and hypotaurine metabolism soj00440   Phosphonate and phosphinate metabolism soj00450   Selenocompound metabolism soj00460   Cyanoamino acid metabolism soj00470   D-Amino acid metabolism soj00480   Glutathione metabolism soj00500   Starch and sucrose metabolism soj00520   Amino sugar and nucleotide sugar metabolism soj00521   Streptomycin biosynthesis soj00523   Polyketide sugar unit biosynthesis soj00540   Lipopolysaccharide biosynthesis soj00541   O-Antigen nucleotide sugar biosynthesis soj00542   O-Antigen repeat unit biosynthesis soj00543   Exopolysaccharide biosynthesis soj00550   Peptidoglycan biosynthesis soj00552   Teichoic acid biosynthesis soj00561   Glycerolipid metabolism soj00562   Inositol phosphate metabolism soj00564   Glycerophospholipid metabolism soj00620   Pyruvate metabolism soj00622   Xylene degradation soj00623   Toluene degradation soj00625   Chloroalkane and chloroalkene degradation soj00626   Naphthalene degradation soj00627   Aminobenzoate degradation soj00630   Glyoxylate and dicarboxylate metabolism soj00633   Nitrotoluene degradation soj00640   Propanoate metabolism soj00643   Styrene degradation soj00650   Butanoate metabolism soj00660   C5-Branched dibasic acid metabolism soj00670   One carbon pool by folate soj00680   Methane metabolism soj00710   Carbon fixation by Calvin cycle soj00720   Other carbon fixation pathways soj00730   Thiamine metabolism soj00740   Riboflavin metabolism soj00750   Vitamin B6 metabolism soj00760   Nicotinate and nicotinamide metabolism soj00770   Pantothenate and CoA biosynthesis soj00780   Biotin metabolism soj00785   Lipoic acid metabolism soj00790   Folate biosynthesis soj00791   Atrazine degradation soj00860   Porphyrin metabolism soj00900   Terpenoid backbone biosynthesis soj00906   Carotenoid biosynthesis soj00907   Pinene, camphor and geraniol degradation soj00910   Nitrogen metabolism soj00920   Sulfur metabolism soj00930   Caprolactam degradation soj00946   Degradation of flavonoids soj00999   Biosynthesis of various plant secondary metabolites soj01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

DBGET integrated database retrieval system