PATHWAY: son01100 Help Entry son01100                    Pathway                                 Name Metabolic pathways - Shewanella oneidensis Class BRITE hierarchy Pathway map son01100   Metabolic pathways Module son_M00002   Glycolysis, core module involving three-carbon compounds [PATH:son01100] son_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:son01100] son_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:son01100] son_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:son01100] son_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:son01100] son_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:son01100] son_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:son01100] son_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:son01100] son_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:son01100] son_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:son01100] son_M00012   Glyoxylate cycle [PATH:son01100] son_M00015   Proline biosynthesis, glutamate => proline [PATH:son01100] son_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:son01100] son_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:son01100] son_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:son01100] son_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:son01100] son_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:son01100] son_M00021   Cysteine biosynthesis, serine => cysteine [PATH:son01100] son_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:son01100] son_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:son01100] son_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:son01100] son_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:son01100] son_M00026   Histidine biosynthesis, PRPP => histidine [PATH:son01100] son_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:son01100] son_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:son01100] son_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:son01100] son_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:son01100] son_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:son01100] son_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:son01100] son_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:son01100] son_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:son01100] son_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:son01100] son_M00063   CMP-KDO biosynthesis [PATH:son01100] son_M00083   Fatty acid biosynthesis, elongation [PATH:son01100] son_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:son01100] son_M00087   beta-Oxidation [PATH:son01100] son_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:son01100] son_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:son01100] son_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:son01100] son_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:son01100] son_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:son01100] son_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:son01100] son_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:son01100] son_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:son01100] son_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:son01100] son_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:son01100] son_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:son01100] son_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:son01100] son_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:son01100] son_M00140   C1-unit interconversion, prokaryotes [PATH:son01100] son_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:son01100] son_M00149   Succinate dehydrogenase, prokaryotes [PATH:son01100] son_M00151   Cytochrome bc1 complex respiratory unit [PATH:son01100] son_M00155   Cytochrome c oxidase, prokaryotes [PATH:son01100] son_M00156   Cytochrome c oxidase, cbb3-type [PATH:son01100] son_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:son01100] son_M00168   CAM (Crassulacean acid metabolism), dark [PATH:son01100] son_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:son01100] son_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:son01100] son_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:son01100] son_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:son01100] son_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:son01100] son_M00621   Glycine cleavage system [PATH:son01100] son_M00793   dTDP-L-rhamnose biosynthesis [PATH:son01100] son_M00844   Arginine biosynthesis, ornithine => arginine [PATH:son01100] son_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:son01100] son_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:son01100] son_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:son01100] son_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:son01100] son_M00970   Proline degradation, proline => glutamate [PATH:son01100] Organism Shewanella oneidensis [GN:son] Related pathway son00010   Glycolysis / Gluconeogenesis son00020   Citrate cycle (TCA cycle) son00030   Pentose phosphate pathway son00040   Pentose and glucuronate interconversions son00051   Fructose and mannose metabolism son00052   Galactose metabolism son00053   Ascorbate and aldarate metabolism son00061   Fatty acid biosynthesis son00071   Fatty acid degradation son00130   Ubiquinone and other terpenoid-quinone biosynthesis son00190   Oxidative phosphorylation son00220   Arginine biosynthesis son00230   Purine metabolism son00240   Pyrimidine metabolism son00250   Alanine, aspartate and glutamate metabolism son00260   Glycine, serine and threonine metabolism son00261   Monobactam biosynthesis son00270   Cysteine and methionine metabolism son00280   Valine, leucine and isoleucine degradation son00290   Valine, leucine and isoleucine biosynthesis son00300   Lysine biosynthesis son00310   Lysine degradation son00330   Arginine and proline metabolism son00332   Carbapenem biosynthesis son00340   Histidine metabolism son00350   Tyrosine metabolism son00360   Phenylalanine metabolism son00361   Chlorocyclohexane and chlorobenzene degradation son00362   Benzoate degradation son00364   Fluorobenzoate degradation son00380   Tryptophan metabolism son00400   Phenylalanine, tyrosine and tryptophan biosynthesis son00401   Novobiocin biosynthesis son00410   beta-Alanine metabolism son00430   Taurine and hypotaurine metabolism son00450   Selenocompound metabolism son00460   Cyanoamino acid metabolism son00470   D-Amino acid metabolism son00480   Glutathione metabolism son00500   Starch and sucrose metabolism son00511   Other glycan degradation son00520   Amino sugar and nucleotide sugar metabolism son00521   Streptomycin biosynthesis son00523   Polyketide sugar unit biosynthesis son00525   Acarbose and validamycin biosynthesis son00540   Lipopolysaccharide biosynthesis son00541   O-Antigen nucleotide sugar biosynthesis son00543   Exopolysaccharide biosynthesis son00550   Peptidoglycan biosynthesis son00552   Teichoic acid biosynthesis son00561   Glycerolipid metabolism son00562   Inositol phosphate metabolism son00564   Glycerophospholipid metabolism son00592   alpha-Linolenic acid metabolism son00600   Sphingolipid metabolism son00620   Pyruvate metabolism son00623   Toluene degradation son00625   Chloroalkane and chloroalkene degradation son00626   Naphthalene degradation son00627   Aminobenzoate degradation son00630   Glyoxylate and dicarboxylate metabolism son00633   Nitrotoluene degradation son00640   Propanoate metabolism son00643   Styrene degradation son00650   Butanoate metabolism son00660   C5-Branched dibasic acid metabolism son00670   One carbon pool by folate son00680   Methane metabolism son00710   Carbon fixation by Calvin cycle son00720   Other carbon fixation pathways son00730   Thiamine metabolism son00740   Riboflavin metabolism son00750   Vitamin B6 metabolism son00760   Nicotinate and nicotinamide metabolism son00770   Pantothenate and CoA biosynthesis son00780   Biotin metabolism son00785   Lipoic acid metabolism son00790   Folate biosynthesis son00860   Porphyrin metabolism son00900   Terpenoid backbone biosynthesis son00903   Limonene degradation son00907   Pinene, camphor and geraniol degradation son00910   Nitrogen metabolism son00920   Sulfur metabolism son00930   Caprolactam degradation son00999   Biosynthesis of various plant secondary metabolites son01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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