PATHWAY: srz01100 Help Entry srz01100                    Pathway                                 Name Metabolic pathways - Serratia rubidaea Class BRITE hierarchy Pathway map srz01100   Metabolic pathways Module srz_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:srz01100] srz_M00002   Glycolysis, core module involving three-carbon compounds [PATH:srz01100] srz_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srz01100] srz_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:srz01100] srz_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:srz01100] srz_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:srz01100] srz_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:srz01100] srz_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:srz01100] srz_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:srz01100] srz_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srz01100] srz_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srz01100] srz_M00012   Glyoxylate cycle [PATH:srz01100] srz_M00015   Proline biosynthesis, glutamate => proline [PATH:srz01100] srz_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:srz01100] srz_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:srz01100] srz_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:srz01100] srz_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:srz01100] srz_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:srz01100] srz_M00021   Cysteine biosynthesis, serine => cysteine [PATH:srz01100] srz_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:srz01100] srz_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:srz01100] srz_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:srz01100] srz_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:srz01100] srz_M00026   Histidine biosynthesis, PRPP => histidine [PATH:srz01100] srz_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:srz01100] srz_M00034   Methionine salvage pathway [PATH:srz01100] srz_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:srz01100] srz_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:srz01100] srz_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:srz01100] srz_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:srz01100] srz_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:srz01100] srz_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:srz01100] srz_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:srz01100] srz_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:srz01100] srz_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:srz01100] srz_M00063   CMP-KDO biosynthesis [PATH:srz01100] srz_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:srz01100] srz_M00082   Fatty acid biosynthesis, initiation [PATH:srz01100] srz_M00083   Fatty acid biosynthesis, elongation [PATH:srz01100] srz_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:srz01100] srz_M00087   beta-Oxidation [PATH:srz01100] srz_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:srz01100] srz_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:srz01100] srz_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:srz01100] srz_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:srz01100] srz_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:srz01100] srz_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:srz01100] srz_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:srz01100] srz_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:srz01100] srz_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:srz01100] srz_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:srz01100] srz_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:srz01100] srz_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:srz01100] srz_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:srz01100] srz_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:srz01100] srz_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:srz01100] srz_M00136   GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:srz01100] srz_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:srz01100] srz_M00150   Fumarate reductase, prokaryotes [PATH:srz01100] srz_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:srz01100] srz_M00168   CAM (Crassulacean acid metabolism), dark [PATH:srz01100] srz_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:srz01100] srz_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srz01100] srz_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:srz01100] srz_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:srz01100] srz_M00417   Cytochrome o ubiquinol oxidase [PATH:srz01100] srz_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:srz01100] srz_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:srz01100] srz_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:srz01100] srz_M00533   Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:srz01100] srz_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:srz01100] srz_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:srz01100] srz_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:srz01100] srz_M00555   Betaine biosynthesis, choline => betaine [PATH:srz01100] srz_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:srz01100] srz_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:srz01100] srz_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:srz01100] srz_M00621   Glycine cleavage system [PATH:srz01100] srz_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:srz01100] srz_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:srz01100] srz_M00790   Pyrrolnitrin biosynthesis, tryptophan => pyrrolnitrin [PATH:srz01100] srz_M00793   dTDP-L-rhamnose biosynthesis [PATH:srz01100] srz_M00844   Arginine biosynthesis, ornithine => arginine [PATH:srz01100] srz_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:srz01100] srz_M00878   Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA [PATH:srz01100] srz_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:srz01100] srz_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:srz01100] srz_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:srz01100] srz_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:srz01100] srz_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:srz01100] srz_M00918   Aerobactin biosynthesis, lysine => aerobactin [PATH:srz01100] srz_M00919   Ectoine degradation, ectoine => aspartate [PATH:srz01100] srz_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:srz01100] srz_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:srz01100] srz_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:srz01100] srz_M00970   Proline degradation, proline => glutamate [PATH:srz01100] srz_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:srz01100] Organism Serratia rubidaea [GN:srz] Related pathway srz00010   Glycolysis / Gluconeogenesis srz00020   Citrate cycle (TCA cycle) srz00030   Pentose phosphate pathway srz00040   Pentose and glucuronate interconversions srz00051   Fructose and mannose metabolism srz00052   Galactose metabolism srz00053   Ascorbate and aldarate metabolism srz00061   Fatty acid biosynthesis srz00071   Fatty acid degradation srz00074   Mycolic acid biosynthesis srz00130   Ubiquinone and other terpenoid-quinone biosynthesis srz00190   Oxidative phosphorylation srz00220   Arginine biosynthesis srz00230   Purine metabolism srz00240   Pyrimidine metabolism srz00250   Alanine, aspartate and glutamate metabolism srz00260   Glycine, serine and threonine metabolism srz00261   Monobactam biosynthesis srz00270   Cysteine and methionine metabolism srz00280   Valine, leucine and isoleucine degradation srz00290   Valine, leucine and isoleucine biosynthesis srz00300   Lysine biosynthesis srz00310   Lysine degradation srz00330   Arginine and proline metabolism srz00332   Carbapenem biosynthesis srz00340   Histidine metabolism srz00350   Tyrosine metabolism srz00360   Phenylalanine metabolism srz00361   Chlorocyclohexane and chlorobenzene degradation srz00362   Benzoate degradation srz00364   Fluorobenzoate degradation srz00380   Tryptophan metabolism srz00400   Phenylalanine, tyrosine and tryptophan biosynthesis srz00401   Novobiocin biosynthesis srz00404   Staurosporine biosynthesis srz00410   beta-Alanine metabolism srz00430   Taurine and hypotaurine metabolism srz00440   Phosphonate and phosphinate metabolism srz00450   Selenocompound metabolism srz00460   Cyanoamino acid metabolism srz00470   D-Amino acid metabolism srz00480   Glutathione metabolism srz00500   Starch and sucrose metabolism srz00511   Other glycan degradation srz00520   Amino sugar and nucleotide sugar metabolism srz00521   Streptomycin biosynthesis srz00523   Polyketide sugar unit biosynthesis srz00525   Acarbose and validamycin biosynthesis srz00540   Lipopolysaccharide biosynthesis srz00541   O-Antigen nucleotide sugar biosynthesis srz00542   O-Antigen repeat unit biosynthesis srz00543   Exopolysaccharide biosynthesis srz00550   Peptidoglycan biosynthesis srz00552   Teichoic acid biosynthesis srz00561   Glycerolipid metabolism srz00562   Inositol phosphate metabolism srz00564   Glycerophospholipid metabolism srz00565   Ether lipid metabolism srz00592   alpha-Linolenic acid metabolism srz00600   Sphingolipid metabolism srz00620   Pyruvate metabolism srz00622   Xylene degradation srz00623   Toluene degradation srz00625   Chloroalkane and chloroalkene degradation srz00626   Naphthalene degradation srz00627   Aminobenzoate degradation srz00630   Glyoxylate and dicarboxylate metabolism srz00633   Nitrotoluene degradation srz00640   Propanoate metabolism srz00650   Butanoate metabolism srz00660   C5-Branched dibasic acid metabolism srz00670   One carbon pool by folate srz00680   Methane metabolism srz00710   Carbon fixation by Calvin cycle srz00720   Other carbon fixation pathways srz00730   Thiamine metabolism srz00740   Riboflavin metabolism srz00750   Vitamin B6 metabolism srz00760   Nicotinate and nicotinamide metabolism srz00770   Pantothenate and CoA biosynthesis srz00780   Biotin metabolism srz00785   Lipoic acid metabolism srz00790   Folate biosynthesis srz00791   Atrazine degradation srz00860   Porphyrin metabolism srz00900   Terpenoid backbone biosynthesis srz00903   Limonene degradation srz00907   Pinene, camphor and geraniol degradation srz00910   Nitrogen metabolism srz00920   Sulfur metabolism srz00930   Caprolactam degradation srz00946   Degradation of flavonoids srz00997   Biosynthesis of various other secondary metabolites srz00999   Biosynthesis of various plant secondary metabolites srz01040   Biosynthesis of unsaturated fatty acids srz01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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