PATHWAY: vdb01100 Help Entry vdb01100                    Pathway                                 Name Metabolic pathways - Vibrio diabolicus Class BRITE hierarchy Pathway map vdb01100   Metabolic pathways Module vdb_M00002   Glycolysis, core module involving three-carbon compounds [PATH:vdb01100] vdb_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vdb01100] vdb_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vdb01100] vdb_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:vdb01100] vdb_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:vdb01100] vdb_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:vdb01100] vdb_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:vdb01100] vdb_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:vdb01100] vdb_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vdb01100] vdb_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vdb01100] vdb_M00012   Glyoxylate cycle [PATH:vdb01100] vdb_M00015   Proline biosynthesis, glutamate => proline [PATH:vdb01100] vdb_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:vdb01100] vdb_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:vdb01100] vdb_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:vdb01100] vdb_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:vdb01100] vdb_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:vdb01100] vdb_M00021   Cysteine biosynthesis, serine => cysteine [PATH:vdb01100] vdb_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:vdb01100] vdb_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:vdb01100] vdb_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:vdb01100] vdb_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:vdb01100] vdb_M00026   Histidine biosynthesis, PRPP => histidine [PATH:vdb01100] vdb_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:vdb01100] vdb_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:vdb01100] vdb_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:vdb01100] vdb_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:vdb01100] vdb_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vdb01100] vdb_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vdb01100] vdb_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vdb01100] vdb_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:vdb01100] vdb_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vdb01100] vdb_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vdb01100] vdb_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:vdb01100] vdb_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:vdb01100] vdb_M00082   Fatty acid biosynthesis, initiation [PATH:vdb01100] vdb_M00083   Fatty acid biosynthesis, elongation [PATH:vdb01100] vdb_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:vdb01100] vdb_M00087   beta-Oxidation [PATH:vdb01100] vdb_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:vdb01100] vdb_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:vdb01100] vdb_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:vdb01100] vdb_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:vdb01100] vdb_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:vdb01100] vdb_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:vdb01100] vdb_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:vdb01100] vdb_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:vdb01100] vdb_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:vdb01100] vdb_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:vdb01100] vdb_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:vdb01100] vdb_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:vdb01100] vdb_M00140   C1-unit interconversion, prokaryotes [PATH:vdb01100] vdb_M00149   Succinate dehydrogenase, prokaryotes [PATH:vdb01100] vdb_M00150   Fumarate reductase, prokaryotes [PATH:vdb01100] vdb_M00151   Cytochrome bc1 complex respiratory unit [PATH:vdb01100] vdb_M00155   Cytochrome c oxidase, prokaryotes [PATH:vdb01100] vdb_M00156   Cytochrome c oxidase, cbb3-type [PATH:vdb01100] vdb_M00168   CAM (Crassulacean acid metabolism), dark [PATH:vdb01100] vdb_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:vdb01100] vdb_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vdb01100] vdb_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:vdb01100] vdb_M00417   Cytochrome o ubiquinol oxidase [PATH:vdb01100] vdb_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:vdb01100] vdb_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:vdb01100] vdb_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:vdb01100] vdb_M00555   Betaine biosynthesis, choline => betaine [PATH:vdb01100] vdb_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:vdb01100] vdb_M00621   Glycine cleavage system [PATH:vdb01100] vdb_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:vdb01100] vdb_M00844   Arginine biosynthesis, ornithine => arginine [PATH:vdb01100] vdb_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:vdb01100] vdb_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:vdb01100] vdb_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:vdb01100] vdb_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:vdb01100] vdb_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:vdb01100] vdb_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:vdb01100] vdb_M00970   Proline degradation, proline => glutamate [PATH:vdb01100] Organism Vibrio diabolicus [GN:vdb] Related pathway vdb00010   Glycolysis / Gluconeogenesis vdb00020   Citrate cycle (TCA cycle) vdb00030   Pentose phosphate pathway vdb00040   Pentose and glucuronate interconversions vdb00051   Fructose and mannose metabolism vdb00052   Galactose metabolism vdb00053   Ascorbate and aldarate metabolism vdb00061   Fatty acid biosynthesis vdb00071   Fatty acid degradation vdb00130   Ubiquinone and other terpenoid-quinone biosynthesis vdb00190   Oxidative phosphorylation vdb00220   Arginine biosynthesis vdb00230   Purine metabolism vdb00240   Pyrimidine metabolism vdb00250   Alanine, aspartate and glutamate metabolism vdb00260   Glycine, serine and threonine metabolism vdb00261   Monobactam biosynthesis vdb00270   Cysteine and methionine metabolism vdb00280   Valine, leucine and isoleucine degradation vdb00290   Valine, leucine and isoleucine biosynthesis vdb00300   Lysine biosynthesis vdb00310   Lysine degradation vdb00330   Arginine and proline metabolism vdb00332   Carbapenem biosynthesis vdb00340   Histidine metabolism vdb00350   Tyrosine metabolism vdb00360   Phenylalanine metabolism vdb00361   Chlorocyclohexane and chlorobenzene degradation vdb00362   Benzoate degradation vdb00364   Fluorobenzoate degradation vdb00380   Tryptophan metabolism vdb00400   Phenylalanine, tyrosine and tryptophan biosynthesis vdb00401   Novobiocin biosynthesis vdb00410   beta-Alanine metabolism vdb00430   Taurine and hypotaurine metabolism vdb00440   Phosphonate and phosphinate metabolism vdb00450   Selenocompound metabolism vdb00460   Cyanoamino acid metabolism vdb00470   D-Amino acid metabolism vdb00480   Glutathione metabolism vdb00500   Starch and sucrose metabolism vdb00511   Other glycan degradation vdb00520   Amino sugar and nucleotide sugar metabolism vdb00521   Streptomycin biosynthesis vdb00523   Polyketide sugar unit biosynthesis vdb00525   Acarbose and validamycin biosynthesis vdb00540   Lipopolysaccharide biosynthesis vdb00541   O-Antigen nucleotide sugar biosynthesis vdb00542   O-Antigen repeat unit biosynthesis vdb00543   Exopolysaccharide biosynthesis vdb00550   Peptidoglycan biosynthesis vdb00552   Teichoic acid biosynthesis vdb00561   Glycerolipid metabolism vdb00562   Inositol phosphate metabolism vdb00564   Glycerophospholipid metabolism vdb00565   Ether lipid metabolism vdb00592   alpha-Linolenic acid metabolism vdb00600   Sphingolipid metabolism vdb00620   Pyruvate metabolism vdb00623   Toluene degradation vdb00625   Chloroalkane and chloroalkene degradation vdb00626   Naphthalene degradation vdb00627   Aminobenzoate degradation vdb00630   Glyoxylate and dicarboxylate metabolism vdb00633   Nitrotoluene degradation vdb00640   Propanoate metabolism vdb00643   Styrene degradation vdb00650   Butanoate metabolism vdb00660   C5-Branched dibasic acid metabolism vdb00670   One carbon pool by folate vdb00680   Methane metabolism vdb00710   Carbon fixation by Calvin cycle vdb00720   Other carbon fixation pathways vdb00730   Thiamine metabolism vdb00740   Riboflavin metabolism vdb00750   Vitamin B6 metabolism vdb00760   Nicotinate and nicotinamide metabolism vdb00770   Pantothenate and CoA biosynthesis vdb00780   Biotin metabolism vdb00785   Lipoic acid metabolism vdb00790   Folate biosynthesis vdb00860   Porphyrin metabolism vdb00900   Terpenoid backbone biosynthesis vdb00907   Pinene, camphor and geraniol degradation vdb00910   Nitrogen metabolism vdb00920   Sulfur metabolism vdb00930   Caprolactam degradation vdb00999   Biosynthesis of various plant secondary metabolites vdb01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

DBGET integrated database retrieval system