PATHWAY: vgi01100 Help Entry vgi01100                    Pathway                                 Name Metabolic pathways - Vibrio gigantis Class BRITE hierarchy Pathway map vgi01100   Metabolic pathways Module vgi_M00002   Glycolysis, core module involving three-carbon compounds [PATH:vgi01100] vgi_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vgi01100] vgi_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vgi01100] vgi_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:vgi01100] vgi_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:vgi01100] vgi_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:vgi01100] vgi_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:vgi01100] vgi_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vgi01100] vgi_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vgi01100] vgi_M00012   Glyoxylate cycle [PATH:vgi01100] vgi_M00015   Proline biosynthesis, glutamate => proline [PATH:vgi01100] vgi_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:vgi01100] vgi_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:vgi01100] vgi_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:vgi01100] vgi_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:vgi01100] vgi_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:vgi01100] vgi_M00021   Cysteine biosynthesis, serine => cysteine [PATH:vgi01100] vgi_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:vgi01100] vgi_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:vgi01100] vgi_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:vgi01100] vgi_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:vgi01100] vgi_M00026   Histidine biosynthesis, PRPP => histidine [PATH:vgi01100] vgi_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:vgi01100] vgi_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:vgi01100] vgi_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:vgi01100] vgi_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vgi01100] vgi_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vgi01100] vgi_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vgi01100] vgi_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:vgi01100] vgi_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vgi01100] vgi_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vgi01100] vgi_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:vgi01100] vgi_M00063   CMP-KDO biosynthesis [PATH:vgi01100] vgi_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:vgi01100] vgi_M00082   Fatty acid biosynthesis, initiation [PATH:vgi01100] vgi_M00083   Fatty acid biosynthesis, elongation [PATH:vgi01100] vgi_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:vgi01100] vgi_M00087   beta-Oxidation [PATH:vgi01100] vgi_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:vgi01100] vgi_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:vgi01100] vgi_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:vgi01100] vgi_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:vgi01100] vgi_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:vgi01100] vgi_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:vgi01100] vgi_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:vgi01100] vgi_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:vgi01100] vgi_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:vgi01100] vgi_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:vgi01100] vgi_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:vgi01100] vgi_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:vgi01100] vgi_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:vgi01100] vgi_M00149   Succinate dehydrogenase, prokaryotes [PATH:vgi01100] vgi_M00150   Fumarate reductase, prokaryotes [PATH:vgi01100] vgi_M00151   Cytochrome bc1 complex respiratory unit [PATH:vgi01100] vgi_M00155   Cytochrome c oxidase, prokaryotes [PATH:vgi01100] vgi_M00156   Cytochrome c oxidase, cbb3-type [PATH:vgi01100] vgi_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:vgi01100] vgi_M00168   CAM (Crassulacean acid metabolism), dark [PATH:vgi01100] vgi_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:vgi01100] vgi_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vgi01100] vgi_M00417   Cytochrome o ubiquinol oxidase [PATH:vgi01100] vgi_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:vgi01100] vgi_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:vgi01100] vgi_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:vgi01100] vgi_M00555   Betaine biosynthesis, choline => betaine [PATH:vgi01100] vgi_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:vgi01100] vgi_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:vgi01100] vgi_M00621   Glycine cleavage system [PATH:vgi01100] vgi_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:vgi01100] vgi_M00844   Arginine biosynthesis, ornithine => arginine [PATH:vgi01100] vgi_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:vgi01100] vgi_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:vgi01100] vgi_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:vgi01100] vgi_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:vgi01100] vgi_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:vgi01100] vgi_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:vgi01100] vgi_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:vgi01100] vgi_M00970   Proline degradation, proline => glutamate [PATH:vgi01100] Organism Vibrio gigantis [GN:vgi] Related pathway vgi00010   Glycolysis / Gluconeogenesis vgi00020   Citrate cycle (TCA cycle) vgi00030   Pentose phosphate pathway vgi00040   Pentose and glucuronate interconversions vgi00051   Fructose and mannose metabolism vgi00052   Galactose metabolism vgi00053   Ascorbate and aldarate metabolism vgi00061   Fatty acid biosynthesis vgi00071   Fatty acid degradation vgi00130   Ubiquinone and other terpenoid-quinone biosynthesis vgi00190   Oxidative phosphorylation vgi00220   Arginine biosynthesis vgi00230   Purine metabolism vgi00240   Pyrimidine metabolism vgi00250   Alanine, aspartate and glutamate metabolism vgi00260   Glycine, serine and threonine metabolism vgi00261   Monobactam biosynthesis vgi00270   Cysteine and methionine metabolism vgi00280   Valine, leucine and isoleucine degradation vgi00290   Valine, leucine and isoleucine biosynthesis vgi00300   Lysine biosynthesis vgi00310   Lysine degradation vgi00330   Arginine and proline metabolism vgi00332   Carbapenem biosynthesis vgi00340   Histidine metabolism vgi00350   Tyrosine metabolism vgi00360   Phenylalanine metabolism vgi00362   Benzoate degradation vgi00380   Tryptophan metabolism vgi00400   Phenylalanine, tyrosine and tryptophan biosynthesis vgi00401   Novobiocin biosynthesis vgi00410   beta-Alanine metabolism vgi00430   Taurine and hypotaurine metabolism vgi00440   Phosphonate and phosphinate metabolism vgi00450   Selenocompound metabolism vgi00460   Cyanoamino acid metabolism vgi00470   D-Amino acid metabolism vgi00480   Glutathione metabolism vgi00500   Starch and sucrose metabolism vgi00511   Other glycan degradation vgi00520   Amino sugar and nucleotide sugar metabolism vgi00521   Streptomycin biosynthesis vgi00523   Polyketide sugar unit biosynthesis vgi00525   Acarbose and validamycin biosynthesis vgi00540   Lipopolysaccharide biosynthesis vgi00541   O-Antigen nucleotide sugar biosynthesis vgi00543   Exopolysaccharide biosynthesis vgi00550   Peptidoglycan biosynthesis vgi00552   Teichoic acid biosynthesis vgi00561   Glycerolipid metabolism vgi00562   Inositol phosphate metabolism vgi00564   Glycerophospholipid metabolism vgi00592   alpha-Linolenic acid metabolism vgi00600   Sphingolipid metabolism vgi00620   Pyruvate metabolism vgi00625   Chloroalkane and chloroalkene degradation vgi00626   Naphthalene degradation vgi00627   Aminobenzoate degradation vgi00630   Glyoxylate and dicarboxylate metabolism vgi00633   Nitrotoluene degradation vgi00640   Propanoate metabolism vgi00643   Styrene degradation vgi00650   Butanoate metabolism vgi00660   C5-Branched dibasic acid metabolism vgi00670   One carbon pool by folate vgi00680   Methane metabolism vgi00710   Carbon fixation by Calvin cycle vgi00720   Other carbon fixation pathways vgi00730   Thiamine metabolism vgi00740   Riboflavin metabolism vgi00750   Vitamin B6 metabolism vgi00760   Nicotinate and nicotinamide metabolism vgi00770   Pantothenate and CoA biosynthesis vgi00780   Biotin metabolism vgi00785   Lipoic acid metabolism vgi00790   Folate biosynthesis vgi00860   Porphyrin metabolism vgi00900   Terpenoid backbone biosynthesis vgi00907   Pinene, camphor and geraniol degradation vgi00910   Nitrogen metabolism vgi00920   Sulfur metabolism vgi00930   Caprolactam degradation vgi00946   Degradation of flavonoids vgi00999   Biosynthesis of various plant secondary metabolites vgi01040   Biosynthesis of unsaturated fatty acids vgi01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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