PATHWAY: vig01100 Help Entry vig01100                    Pathway                                 Name Metabolic pathways - Virgibacillus sp. 6R Class BRITE hierarchy Pathway map vig01100   Metabolic pathways Module vig_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vig01100] vig_M00002   Glycolysis, core module involving three-carbon compounds [PATH:vig01100] vig_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vig01100] vig_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vig01100] vig_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:vig01100] vig_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:vig01100] vig_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:vig01100] vig_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:vig01100] vig_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vig01100] vig_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vig01100] vig_M00012   Glyoxylate cycle [PATH:vig01100] vig_M00015   Proline biosynthesis, glutamate => proline [PATH:vig01100] vig_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:vig01100] vig_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:vig01100] vig_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:vig01100] vig_M00021   Cysteine biosynthesis, serine => cysteine [PATH:vig01100] vig_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:vig01100] vig_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:vig01100] vig_M00026   Histidine biosynthesis, PRPP => histidine [PATH:vig01100] vig_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:vig01100] vig_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:vig01100] vig_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vig01100] vig_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vig01100] vig_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vig01100] vig_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vig01100] vig_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vig01100] vig_M00082   Fatty acid biosynthesis, initiation [PATH:vig01100] vig_M00083   Fatty acid biosynthesis, elongation [PATH:vig01100] vig_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:vig01100] vig_M00087   beta-Oxidation [PATH:vig01100] vig_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:vig01100] vig_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:vig01100] vig_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:vig01100] vig_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:vig01100] vig_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:vig01100] vig_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:vig01100] vig_M00140   C1-unit interconversion, prokaryotes [PATH:vig01100] vig_M00151   Cytochrome bc1 complex respiratory unit [PATH:vig01100] vig_M00155   Cytochrome c oxidase, prokaryotes [PATH:vig01100] vig_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:vig01100] vig_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:vig01100] vig_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vig01100] vig_M00345   Formaldehyde assimilation, ribulose monophosphate pathway [PATH:vig01100] vig_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:vig01100] vig_M00416   Cytochrome aa3-600 menaquinol oxidase [PATH:vig01100] vig_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:vig01100] vig_M00525   Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:vig01100] vig_M00527   Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:vig01100] vig_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:vig01100] vig_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:vig01100] vig_M00555   Betaine biosynthesis, choline => betaine [PATH:vig01100] vig_M00569   Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:vig01100] vig_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:vig01100] vig_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:vig01100] vig_M00580   Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:vig01100] vig_M00621   Glycine cleavage system [PATH:vig01100] vig_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:vig01100] vig_M00844   Arginine biosynthesis, ornithine => arginine [PATH:vig01100] vig_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:vig01100] vig_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:vig01100] vig_M00883   Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:vig01100] vig_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:vig01100] vig_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:vig01100] vig_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:vig01100] vig_M00926   Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:vig01100] vig_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:vig01100] vig_M00970   Proline degradation, proline => glutamate [PATH:vig01100] vig_M00972   Proline metabolism [PATH:vig01100] Organism Virgibacillus sp. 6R [GN:vig] Related pathway vig00010   Glycolysis / Gluconeogenesis vig00020   Citrate cycle (TCA cycle) vig00030   Pentose phosphate pathway vig00040   Pentose and glucuronate interconversions vig00051   Fructose and mannose metabolism vig00052   Galactose metabolism vig00053   Ascorbate and aldarate metabolism vig00061   Fatty acid biosynthesis vig00071   Fatty acid degradation vig00100   Steroid biosynthesis vig00130   Ubiquinone and other terpenoid-quinone biosynthesis vig00190   Oxidative phosphorylation vig00220   Arginine biosynthesis vig00230   Purine metabolism vig00240   Pyrimidine metabolism vig00250   Alanine, aspartate and glutamate metabolism vig00260   Glycine, serine and threonine metabolism vig00261   Monobactam biosynthesis vig00270   Cysteine and methionine metabolism vig00280   Valine, leucine and isoleucine degradation vig00290   Valine, leucine and isoleucine biosynthesis vig00300   Lysine biosynthesis vig00310   Lysine degradation vig00311   Penicillin and cephalosporin biosynthesis vig00330   Arginine and proline metabolism vig00332   Carbapenem biosynthesis vig00340   Histidine metabolism vig00350   Tyrosine metabolism vig00360   Phenylalanine metabolism vig00362   Benzoate degradation vig00380   Tryptophan metabolism vig00400   Phenylalanine, tyrosine and tryptophan biosynthesis vig00401   Novobiocin biosynthesis vig00410   beta-Alanine metabolism vig00430   Taurine and hypotaurine metabolism vig00440   Phosphonate and phosphinate metabolism vig00450   Selenocompound metabolism vig00460   Cyanoamino acid metabolism vig00470   D-Amino acid metabolism vig00480   Glutathione metabolism vig00500   Starch and sucrose metabolism vig00511   Other glycan degradation vig00520   Amino sugar and nucleotide sugar metabolism vig00521   Streptomycin biosynthesis vig00523   Polyketide sugar unit biosynthesis vig00525   Acarbose and validamycin biosynthesis vig00540   Lipopolysaccharide biosynthesis vig00541   O-Antigen nucleotide sugar biosynthesis vig00542   O-Antigen repeat unit biosynthesis vig00543   Exopolysaccharide biosynthesis vig00550   Peptidoglycan biosynthesis vig00552   Teichoic acid biosynthesis vig00561   Glycerolipid metabolism vig00562   Inositol phosphate metabolism vig00564   Glycerophospholipid metabolism vig00592   alpha-Linolenic acid metabolism vig00600   Sphingolipid metabolism vig00620   Pyruvate metabolism vig00621   Dioxin degradation vig00622   Xylene degradation vig00625   Chloroalkane and chloroalkene degradation vig00626   Naphthalene degradation vig00627   Aminobenzoate degradation vig00630   Glyoxylate and dicarboxylate metabolism vig00640   Propanoate metabolism vig00643   Styrene degradation vig00650   Butanoate metabolism vig00660   C5-Branched dibasic acid metabolism vig00670   One carbon pool by folate vig00680   Methane metabolism vig00710   Carbon fixation by Calvin cycle vig00720   Other carbon fixation pathways vig00730   Thiamine metabolism vig00740   Riboflavin metabolism vig00750   Vitamin B6 metabolism vig00760   Nicotinate and nicotinamide metabolism vig00770   Pantothenate and CoA biosynthesis vig00780   Biotin metabolism vig00785   Lipoic acid metabolism vig00790   Folate biosynthesis vig00860   Porphyrin metabolism vig00900   Terpenoid backbone biosynthesis vig00907   Pinene, camphor and geraniol degradation vig00909   Sesquiterpenoid and triterpenoid biosynthesis vig00910   Nitrogen metabolism vig00920   Sulfur metabolism vig00999   Biosynthesis of various plant secondary metabolites KO pathway ko01100     LinkDB All DBs

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