PATHWAY: xdo01100 Help Entry xdo01100                    Pathway                                 Name Metabolic pathways - Xenorhabdus doucetiae Class BRITE hierarchy Pathway map xdo01100   Metabolic pathways Module xdo_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:xdo01100] xdo_M00002   Glycolysis, core module involving three-carbon compounds [PATH:xdo01100] xdo_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:xdo01100] xdo_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:xdo01100] xdo_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:xdo01100] xdo_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:xdo01100] xdo_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:xdo01100] xdo_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:xdo01100] xdo_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xdo01100] xdo_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xdo01100] xdo_M00012   Glyoxylate cycle [PATH:xdo01100] xdo_M00015   Proline biosynthesis, glutamate => proline [PATH:xdo01100] xdo_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:xdo01100] xdo_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:xdo01100] xdo_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:xdo01100] xdo_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:xdo01100] xdo_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:xdo01100] xdo_M00021   Cysteine biosynthesis, serine => cysteine [PATH:xdo01100] xdo_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:xdo01100] xdo_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:xdo01100] xdo_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:xdo01100] xdo_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:xdo01100] xdo_M00026   Histidine biosynthesis, PRPP => histidine [PATH:xdo01100] xdo_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:xdo01100] xdo_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:xdo01100] xdo_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:xdo01100] xdo_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:xdo01100] xdo_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:xdo01100] xdo_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:xdo01100] xdo_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:xdo01100] xdo_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:xdo01100] xdo_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:xdo01100] xdo_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:xdo01100] xdo_M00063   CMP-KDO biosynthesis [PATH:xdo01100] xdo_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:xdo01100] xdo_M00082   Fatty acid biosynthesis, initiation [PATH:xdo01100] xdo_M00083   Fatty acid biosynthesis, elongation [PATH:xdo01100] xdo_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:xdo01100] xdo_M00087   beta-Oxidation [PATH:xdo01100] xdo_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:xdo01100] xdo_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:xdo01100] xdo_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:xdo01100] xdo_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:xdo01100] xdo_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:xdo01100] xdo_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:xdo01100] xdo_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:xdo01100] xdo_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:xdo01100] xdo_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:xdo01100] xdo_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:xdo01100] xdo_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:xdo01100] xdo_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:xdo01100] xdo_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:xdo01100] xdo_M00149   Succinate dehydrogenase, prokaryotes [PATH:xdo01100] xdo_M00150   Fumarate reductase, prokaryotes [PATH:xdo01100] xdo_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:xdo01100] xdo_M00168   CAM (Crassulacean acid metabolism), dark [PATH:xdo01100] xdo_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:xdo01100] xdo_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xdo01100] xdo_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:xdo01100] xdo_M00417   Cytochrome o ubiquinol oxidase [PATH:xdo01100] xdo_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:xdo01100] xdo_M00533   Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:xdo01100] xdo_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:xdo01100] xdo_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:xdo01100] xdo_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:xdo01100] xdo_M00555   Betaine biosynthesis, choline => betaine [PATH:xdo01100] xdo_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:xdo01100] xdo_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:xdo01100] xdo_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:xdo01100] xdo_M00621   Glycine cleavage system [PATH:xdo01100] xdo_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:xdo01100] xdo_M00844   Arginine biosynthesis, ornithine => arginine [PATH:xdo01100] xdo_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:xdo01100] xdo_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:xdo01100] xdo_M00878   Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA [PATH:xdo01100] xdo_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:xdo01100] xdo_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:xdo01100] xdo_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:xdo01100] xdo_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:xdo01100] xdo_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:xdo01100] xdo_M00970   Proline degradation, proline => glutamate [PATH:xdo01100] Organism Xenorhabdus doucetiae [GN:xdo] Related pathway xdo00010   Glycolysis / Gluconeogenesis xdo00020   Citrate cycle (TCA cycle) xdo00030   Pentose phosphate pathway xdo00040   Pentose and glucuronate interconversions xdo00051   Fructose and mannose metabolism xdo00052   Galactose metabolism xdo00053   Ascorbate and aldarate metabolism xdo00061   Fatty acid biosynthesis xdo00071   Fatty acid degradation xdo00130   Ubiquinone and other terpenoid-quinone biosynthesis xdo00190   Oxidative phosphorylation xdo00220   Arginine biosynthesis xdo00230   Purine metabolism xdo00240   Pyrimidine metabolism xdo00250   Alanine, aspartate and glutamate metabolism xdo00260   Glycine, serine and threonine metabolism xdo00261   Monobactam biosynthesis xdo00270   Cysteine and methionine metabolism xdo00280   Valine, leucine and isoleucine degradation xdo00290   Valine, leucine and isoleucine biosynthesis xdo00300   Lysine biosynthesis xdo00310   Lysine degradation xdo00330   Arginine and proline metabolism xdo00332   Carbapenem biosynthesis xdo00340   Histidine metabolism xdo00350   Tyrosine metabolism xdo00360   Phenylalanine metabolism xdo00362   Benzoate degradation xdo00380   Tryptophan metabolism xdo00400   Phenylalanine, tyrosine and tryptophan biosynthesis xdo00401   Novobiocin biosynthesis xdo00405   Phenazine biosynthesis xdo00410   beta-Alanine metabolism xdo00430   Taurine and hypotaurine metabolism xdo00450   Selenocompound metabolism xdo00460   Cyanoamino acid metabolism xdo00470   D-Amino acid metabolism xdo00480   Glutathione metabolism xdo00500   Starch and sucrose metabolism xdo00511   Other glycan degradation xdo00520   Amino sugar and nucleotide sugar metabolism xdo00521   Streptomycin biosynthesis xdo00523   Polyketide sugar unit biosynthesis xdo00525   Acarbose and validamycin biosynthesis xdo00540   Lipopolysaccharide biosynthesis xdo00541   O-Antigen nucleotide sugar biosynthesis xdo00542   O-Antigen repeat unit biosynthesis xdo00543   Exopolysaccharide biosynthesis xdo00550   Peptidoglycan biosynthesis xdo00552   Teichoic acid biosynthesis xdo00561   Glycerolipid metabolism xdo00562   Inositol phosphate metabolism xdo00564   Glycerophospholipid metabolism xdo00565   Ether lipid metabolism xdo00592   alpha-Linolenic acid metabolism xdo00600   Sphingolipid metabolism xdo00620   Pyruvate metabolism xdo00625   Chloroalkane and chloroalkene degradation xdo00626   Naphthalene degradation xdo00627   Aminobenzoate degradation xdo00630   Glyoxylate and dicarboxylate metabolism xdo00633   Nitrotoluene degradation xdo00640   Propanoate metabolism xdo00643   Styrene degradation xdo00650   Butanoate metabolism xdo00660   C5-Branched dibasic acid metabolism xdo00670   One carbon pool by folate xdo00680   Methane metabolism xdo00710   Carbon fixation by Calvin cycle xdo00720   Other carbon fixation pathways xdo00730   Thiamine metabolism xdo00740   Riboflavin metabolism xdo00750   Vitamin B6 metabolism xdo00760   Nicotinate and nicotinamide metabolism xdo00770   Pantothenate and CoA biosynthesis xdo00780   Biotin metabolism xdo00785   Lipoic acid metabolism xdo00790   Folate biosynthesis xdo00860   Porphyrin metabolism xdo00900   Terpenoid backbone biosynthesis xdo00907   Pinene, camphor and geraniol degradation xdo00910   Nitrogen metabolism xdo00920   Sulfur metabolism xdo00930   Caprolactam degradation xdo00997   Biosynthesis of various other secondary metabolites xdo00998   Biosynthesis of various antibiotics xdo00999   Biosynthesis of various plant secondary metabolites xdo01040   Biosynthesis of unsaturated fatty acids xdo01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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