KEGG   PATHWAY: yfr01100
Entry
yfr01100                    Pathway                                
Name
Metabolic pathways - Yersinia frederiksenii
Class
Pathway map
yfr01100  Metabolic pathways
yfr01100

Module
yfr_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:yfr01100]
yfr_M00002  Glycolysis, core module involving three-carbon compounds [PATH:yfr01100]
yfr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yfr01100]
yfr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:yfr01100]
yfr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:yfr01100]
yfr_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:yfr01100]
yfr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:yfr01100]
yfr_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:yfr01100]
yfr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:yfr01100]
yfr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yfr01100]
yfr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yfr01100]
yfr_M00012  Glyoxylate cycle [PATH:yfr01100]
yfr_M00015  Proline biosynthesis, glutamate => proline [PATH:yfr01100]
yfr_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:yfr01100]
yfr_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:yfr01100]
yfr_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:yfr01100]
yfr_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:yfr01100]
yfr_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:yfr01100]
yfr_M00021  Cysteine biosynthesis, serine => cysteine [PATH:yfr01100]
yfr_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:yfr01100]
yfr_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:yfr01100]
yfr_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:yfr01100]
yfr_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:yfr01100]
yfr_M00026  Histidine biosynthesis, PRPP => histidine [PATH:yfr01100]
yfr_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:yfr01100]
yfr_M00034  Methionine salvage pathway [PATH:yfr01100]
yfr_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:yfr01100]
yfr_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:yfr01100]
yfr_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:yfr01100]
yfr_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:yfr01100]
yfr_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:yfr01100]
yfr_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:yfr01100]
yfr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:yfr01100]
yfr_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:yfr01100]
yfr_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:yfr01100]
yfr_M00063  CMP-KDO biosynthesis [PATH:yfr01100]
yfr_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:yfr01100]
yfr_M00082  Fatty acid biosynthesis, initiation [PATH:yfr01100]
yfr_M00083  Fatty acid biosynthesis, elongation [PATH:yfr01100]
yfr_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:yfr01100]
yfr_M00087  beta-Oxidation [PATH:yfr01100]
yfr_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:yfr01100]
yfr_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:yfr01100]
yfr_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:yfr01100]
yfr_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:yfr01100]
yfr_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:yfr01100]
yfr_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:yfr01100]
yfr_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:yfr01100]
yfr_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:yfr01100]
yfr_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:yfr01100]
yfr_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:yfr01100]
yfr_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:yfr01100]
yfr_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:yfr01100]
yfr_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:yfr01100]
yfr_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:yfr01100]
yfr_M00140  C1-unit interconversion, prokaryotes [PATH:yfr01100]
yfr_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:yfr01100]
yfr_M00149  Succinate dehydrogenase, prokaryotes [PATH:yfr01100]
yfr_M00150  Fumarate reductase, prokaryotes [PATH:yfr01100]
yfr_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:yfr01100]
yfr_M00168  CAM (Crassulacean acid metabolism), dark [PATH:yfr01100]
yfr_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:yfr01100]
yfr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yfr01100]
yfr_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:yfr01100]
yfr_M00417  Cytochrome o ubiquinol oxidase [PATH:yfr01100]
yfr_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:yfr01100]
yfr_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:yfr01100]
yfr_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:yfr01100]
yfr_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:yfr01100]
yfr_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:yfr01100]
yfr_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:yfr01100]
yfr_M00621  Glycine cleavage system [PATH:yfr01100]
yfr_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:yfr01100]
yfr_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:yfr01100]
yfr_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:yfr01100]
yfr_M00844  Arginine biosynthesis, ornithine => arginine [PATH:yfr01100]
yfr_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:yfr01100]
yfr_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:yfr01100]
yfr_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:yfr01100]
yfr_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:yfr01100]
yfr_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:yfr01100]
yfr_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:yfr01100]
yfr_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:yfr01100]
yfr_M00924  Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:yfr01100]
yfr_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:yfr01100]
yfr_M00970  Proline degradation, proline => glutamate [PATH:yfr01100]
Organism
Yersinia frederiksenii [GN:yfr]
Related
pathway
yfr00010  Glycolysis / Gluconeogenesis
yfr00020  Citrate cycle (TCA cycle)
yfr00030  Pentose phosphate pathway
yfr00040  Pentose and glucuronate interconversions
yfr00051  Fructose and mannose metabolism
yfr00052  Galactose metabolism
yfr00053  Ascorbate and aldarate metabolism
yfr00061  Fatty acid biosynthesis
yfr00071  Fatty acid degradation
yfr00074  Mycolic acid biosynthesis
yfr00130  Ubiquinone and other terpenoid-quinone biosynthesis
yfr00190  Oxidative phosphorylation
yfr00220  Arginine biosynthesis
yfr00230  Purine metabolism
yfr00240  Pyrimidine metabolism
yfr00250  Alanine, aspartate and glutamate metabolism
yfr00260  Glycine, serine and threonine metabolism
yfr00261  Monobactam biosynthesis
yfr00270  Cysteine and methionine metabolism
yfr00280  Valine, leucine and isoleucine degradation
yfr00290  Valine, leucine and isoleucine biosynthesis
yfr00300  Lysine biosynthesis
yfr00310  Lysine degradation
yfr00330  Arginine and proline metabolism
yfr00332  Carbapenem biosynthesis
yfr00340  Histidine metabolism
yfr00350  Tyrosine metabolism
yfr00360  Phenylalanine metabolism
yfr00361  Chlorocyclohexane and chlorobenzene degradation
yfr00362  Benzoate degradation
yfr00364  Fluorobenzoate degradation
yfr00380  Tryptophan metabolism
yfr00400  Phenylalanine, tyrosine and tryptophan biosynthesis
yfr00401  Novobiocin biosynthesis
yfr00410  beta-Alanine metabolism
yfr00430  Taurine and hypotaurine metabolism
yfr00440  Phosphonate and phosphinate metabolism
yfr00450  Selenocompound metabolism
yfr00460  Cyanoamino acid metabolism
yfr00470  D-Amino acid metabolism
yfr00480  Glutathione metabolism
yfr00500  Starch and sucrose metabolism
yfr00511  Other glycan degradation
yfr00520  Amino sugar and nucleotide sugar metabolism
yfr00521  Streptomycin biosynthesis
yfr00523  Polyketide sugar unit biosynthesis
yfr00525  Acarbose and validamycin biosynthesis
yfr00540  Lipopolysaccharide biosynthesis
yfr00541  O-Antigen nucleotide sugar biosynthesis
yfr00542  O-Antigen repeat unit biosynthesis
yfr00543  Exopolysaccharide biosynthesis
yfr00550  Peptidoglycan biosynthesis
yfr00552  Teichoic acid biosynthesis
yfr00561  Glycerolipid metabolism
yfr00562  Inositol phosphate metabolism
yfr00564  Glycerophospholipid metabolism
yfr00565  Ether lipid metabolism
yfr00592  alpha-Linolenic acid metabolism
yfr00600  Sphingolipid metabolism
yfr00620  Pyruvate metabolism
yfr00623  Toluene degradation
yfr00625  Chloroalkane and chloroalkene degradation
yfr00626  Naphthalene degradation
yfr00627  Aminobenzoate degradation
yfr00630  Glyoxylate and dicarboxylate metabolism
yfr00633  Nitrotoluene degradation
yfr00640  Propanoate metabolism
yfr00643  Styrene degradation
yfr00650  Butanoate metabolism
yfr00660  C5-Branched dibasic acid metabolism
yfr00670  One carbon pool by folate
yfr00680  Methane metabolism
yfr00710  Carbon fixation by Calvin cycle
yfr00720  Other carbon fixation pathways
yfr00730  Thiamine metabolism
yfr00740  Riboflavin metabolism
yfr00750  Vitamin B6 metabolism
yfr00760  Nicotinate and nicotinamide metabolism
yfr00770  Pantothenate and CoA biosynthesis
yfr00780  Biotin metabolism
yfr00785  Lipoic acid metabolism
yfr00790  Folate biosynthesis
yfr00860  Porphyrin metabolism
yfr00900  Terpenoid backbone biosynthesis
yfr00907  Pinene, camphor and geraniol degradation
yfr00910  Nitrogen metabolism
yfr00920  Sulfur metabolism
yfr00930  Caprolactam degradation
yfr00999  Biosynthesis of various plant secondary metabolites
yfr01040  Biosynthesis of unsaturated fatty acids
yfr01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
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