PATHWAY: yma01100 Help Entry yma01100                    Pathway                                 Name Metabolic pathways - Yersinia massiliensis Class BRITE hierarchy Pathway map yma01100   Metabolic pathways Module yma_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:yma01100] yma_M00002   Glycolysis, core module involving three-carbon compounds [PATH:yma01100] yma_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yma01100] yma_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:yma01100] yma_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:yma01100] yma_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:yma01100] yma_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:yma01100] yma_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:yma01100] yma_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:yma01100] yma_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yma01100] yma_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yma01100] yma_M00012   Glyoxylate cycle [PATH:yma01100] yma_M00015   Proline biosynthesis, glutamate => proline [PATH:yma01100] yma_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:yma01100] yma_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:yma01100] yma_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:yma01100] yma_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:yma01100] yma_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:yma01100] yma_M00021   Cysteine biosynthesis, serine => cysteine [PATH:yma01100] yma_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:yma01100] yma_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:yma01100] yma_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:yma01100] yma_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:yma01100] yma_M00026   Histidine biosynthesis, PRPP => histidine [PATH:yma01100] yma_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:yma01100] yma_M00034   Methionine salvage pathway [PATH:yma01100] yma_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:yma01100] yma_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:yma01100] yma_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:yma01100] yma_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:yma01100] yma_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:yma01100] yma_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:yma01100] yma_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:yma01100] yma_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:yma01100] yma_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:yma01100] yma_M00063   CMP-KDO biosynthesis [PATH:yma01100] yma_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:yma01100] yma_M00082   Fatty acid biosynthesis, initiation [PATH:yma01100] yma_M00083   Fatty acid biosynthesis, elongation [PATH:yma01100] yma_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:yma01100] yma_M00087   beta-Oxidation [PATH:yma01100] yma_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:yma01100] yma_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:yma01100] yma_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:yma01100] yma_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:yma01100] yma_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:yma01100] yma_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:yma01100] yma_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:yma01100] yma_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:yma01100] yma_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:yma01100] yma_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:yma01100] yma_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:yma01100] yma_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:yma01100] yma_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:yma01100] yma_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:yma01100] yma_M00140   C1-unit interconversion, prokaryotes [PATH:yma01100] yma_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:yma01100] yma_M00149   Succinate dehydrogenase, prokaryotes [PATH:yma01100] yma_M00150   Fumarate reductase, prokaryotes [PATH:yma01100] yma_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:yma01100] yma_M00168   CAM (Crassulacean acid metabolism), dark [PATH:yma01100] yma_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:yma01100] yma_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yma01100] yma_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:yma01100] yma_M00417   Cytochrome o ubiquinol oxidase [PATH:yma01100] yma_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:yma01100] yma_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:yma01100] yma_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:yma01100] yma_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:yma01100] yma_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:yma01100] yma_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:yma01100] yma_M00621   Glycine cleavage system [PATH:yma01100] yma_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:yma01100] yma_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:yma01100] yma_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:yma01100] yma_M00844   Arginine biosynthesis, ornithine => arginine [PATH:yma01100] yma_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:yma01100] yma_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:yma01100] yma_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:yma01100] yma_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:yma01100] yma_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:yma01100] yma_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:yma01100] yma_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:yma01100] yma_M00918   Aerobactin biosynthesis, lysine => aerobactin [PATH:yma01100] yma_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:yma01100] yma_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:yma01100] yma_M00939   Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:yma01100] yma_M00970   Proline degradation, proline => glutamate [PATH:yma01100] Organism Yersinia massiliensis [GN:yma] Related pathway yma00010   Glycolysis / Gluconeogenesis yma00020   Citrate cycle (TCA cycle) yma00030   Pentose phosphate pathway yma00040   Pentose and glucuronate interconversions yma00051   Fructose and mannose metabolism yma00052   Galactose metabolism yma00053   Ascorbate and aldarate metabolism yma00061   Fatty acid biosynthesis yma00071   Fatty acid degradation yma00130   Ubiquinone and other terpenoid-quinone biosynthesis yma00190   Oxidative phosphorylation yma00220   Arginine biosynthesis yma00230   Purine metabolism yma00240   Pyrimidine metabolism yma00250   Alanine, aspartate and glutamate metabolism yma00260   Glycine, serine and threonine metabolism yma00261   Monobactam biosynthesis yma00270   Cysteine and methionine metabolism yma00280   Valine, leucine and isoleucine degradation yma00290   Valine, leucine and isoleucine biosynthesis yma00300   Lysine biosynthesis yma00310   Lysine degradation yma00330   Arginine and proline metabolism yma00332   Carbapenem biosynthesis yma00340   Histidine metabolism yma00350   Tyrosine metabolism yma00360   Phenylalanine metabolism yma00361   Chlorocyclohexane and chlorobenzene degradation yma00362   Benzoate degradation yma00364   Fluorobenzoate degradation yma00380   Tryptophan metabolism yma00400   Phenylalanine, tyrosine and tryptophan biosynthesis yma00401   Novobiocin biosynthesis yma00410   beta-Alanine metabolism yma00430   Taurine and hypotaurine metabolism yma00440   Phosphonate and phosphinate metabolism yma00450   Selenocompound metabolism yma00460   Cyanoamino acid metabolism yma00470   D-Amino acid metabolism yma00480   Glutathione metabolism yma00500   Starch and sucrose metabolism yma00511   Other glycan degradation yma00520   Amino sugar and nucleotide sugar metabolism yma00521   Streptomycin biosynthesis yma00523   Polyketide sugar unit biosynthesis yma00525   Acarbose and validamycin biosynthesis yma00540   Lipopolysaccharide biosynthesis yma00541   O-Antigen nucleotide sugar biosynthesis yma00542   O-Antigen repeat unit biosynthesis yma00543   Exopolysaccharide biosynthesis yma00550   Peptidoglycan biosynthesis yma00552   Teichoic acid biosynthesis yma00561   Glycerolipid metabolism yma00562   Inositol phosphate metabolism yma00564   Glycerophospholipid metabolism yma00565   Ether lipid metabolism yma00592   alpha-Linolenic acid metabolism yma00600   Sphingolipid metabolism yma00620   Pyruvate metabolism yma00623   Toluene degradation yma00625   Chloroalkane and chloroalkene degradation yma00626   Naphthalene degradation yma00627   Aminobenzoate degradation yma00630   Glyoxylate and dicarboxylate metabolism yma00633   Nitrotoluene degradation yma00640   Propanoate metabolism yma00643   Styrene degradation yma00650   Butanoate metabolism yma00660   C5-Branched dibasic acid metabolism yma00670   One carbon pool by folate yma00680   Methane metabolism yma00710   Carbon fixation by Calvin cycle yma00720   Other carbon fixation pathways yma00730   Thiamine metabolism yma00740   Riboflavin metabolism yma00750   Vitamin B6 metabolism yma00760   Nicotinate and nicotinamide metabolism yma00770   Pantothenate and CoA biosynthesis yma00780   Biotin metabolism yma00785   Lipoic acid metabolism yma00790   Folate biosynthesis yma00860   Porphyrin metabolism yma00900   Terpenoid backbone biosynthesis yma00907   Pinene, camphor and geraniol degradation yma00910   Nitrogen metabolism yma00920   Sulfur metabolism yma00930   Caprolactam degradation yma00997   Biosynthesis of various other secondary metabolites yma00999   Biosynthesis of various plant secondary metabolites yma01040   Biosynthesis of unsaturated fatty acids yma01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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