KEGG   PATHWAY: yre01100
Entry
yre01100                    Pathway                                
Name
Metabolic pathways - Yokenella regensburgei
Class
Pathway map
yre01100  Metabolic pathways
yre01100

Module
yre_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:yre01100]
yre_M00002  Glycolysis, core module involving three-carbon compounds [PATH:yre01100]
yre_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yre01100]
yre_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:yre01100]
yre_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:yre01100]
yre_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:yre01100]
yre_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:yre01100]
yre_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:yre01100]
yre_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:yre01100]
yre_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yre01100]
yre_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yre01100]
yre_M00012  Glyoxylate cycle [PATH:yre01100]
yre_M00015  Proline biosynthesis, glutamate => proline [PATH:yre01100]
yre_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:yre01100]
yre_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:yre01100]
yre_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:yre01100]
yre_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:yre01100]
yre_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:yre01100]
yre_M00021  Cysteine biosynthesis, serine => cysteine [PATH:yre01100]
yre_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:yre01100]
yre_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:yre01100]
yre_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:yre01100]
yre_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:yre01100]
yre_M00026  Histidine biosynthesis, PRPP => histidine [PATH:yre01100]
yre_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:yre01100]
yre_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:yre01100]
yre_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:yre01100]
yre_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:yre01100]
yre_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:yre01100]
yre_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:yre01100]
yre_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:yre01100]
yre_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:yre01100]
yre_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:yre01100]
yre_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:yre01100]
yre_M00063  CMP-KDO biosynthesis [PATH:yre01100]
yre_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:yre01100]
yre_M00082  Fatty acid biosynthesis, initiation [PATH:yre01100]
yre_M00083  Fatty acid biosynthesis, elongation [PATH:yre01100]
yre_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:yre01100]
yre_M00087  beta-Oxidation [PATH:yre01100]
yre_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:yre01100]
yre_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:yre01100]
yre_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:yre01100]
yre_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:yre01100]
yre_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:yre01100]
yre_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:yre01100]
yre_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:yre01100]
yre_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:yre01100]
yre_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:yre01100]
yre_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:yre01100]
yre_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:yre01100]
yre_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:yre01100]
yre_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:yre01100]
yre_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:yre01100]
yre_M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:yre01100]
yre_M00136  GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:yre01100]
yre_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:yre01100]
yre_M00149  Succinate dehydrogenase, prokaryotes [PATH:yre01100]
yre_M00150  Fumarate reductase, prokaryotes [PATH:yre01100]
yre_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:yre01100]
yre_M00168  CAM (Crassulacean acid metabolism), dark [PATH:yre01100]
yre_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:yre01100]
yre_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yre01100]
yre_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:yre01100]
yre_M00417  Cytochrome o ubiquinol oxidase [PATH:yre01100]
yre_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:yre01100]
yre_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:yre01100]
yre_M00533  Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:yre01100]
yre_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:yre01100]
yre_M00550  Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:yre01100]
yre_M00552  D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:yre01100]
yre_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:yre01100]
yre_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:yre01100]
yre_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:yre01100]
yre_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:yre01100]
yre_M00621  Glycine cleavage system [PATH:yre01100]
yre_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:yre01100]
yre_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:yre01100]
yre_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:yre01100]
yre_M00844  Arginine biosynthesis, ornithine => arginine [PATH:yre01100]
yre_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:yre01100]
yre_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:yre01100]
yre_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:yre01100]
yre_M00878  Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA [PATH:yre01100]
yre_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:yre01100]
yre_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:yre01100]
yre_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:yre01100]
yre_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:yre01100]
yre_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:yre01100]
yre_M00918  Aerobactin biosynthesis, lysine => aerobactin [PATH:yre01100]
yre_M00924  Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:yre01100]
yre_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:yre01100]
yre_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:yre01100]
yre_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:yre01100]
yre_M00970  Proline degradation, proline => glutamate [PATH:yre01100]
Organism
Yokenella regensburgei [GN:yre]
Related
pathway
yre00010  Glycolysis / Gluconeogenesis
yre00020  Citrate cycle (TCA cycle)
yre00030  Pentose phosphate pathway
yre00040  Pentose and glucuronate interconversions
yre00051  Fructose and mannose metabolism
yre00052  Galactose metabolism
yre00053  Ascorbate and aldarate metabolism
yre00061  Fatty acid biosynthesis
yre00071  Fatty acid degradation
yre00130  Ubiquinone and other terpenoid-quinone biosynthesis
yre00190  Oxidative phosphorylation
yre00220  Arginine biosynthesis
yre00230  Purine metabolism
yre00240  Pyrimidine metabolism
yre00250  Alanine, aspartate and glutamate metabolism
yre00260  Glycine, serine and threonine metabolism
yre00261  Monobactam biosynthesis
yre00270  Cysteine and methionine metabolism
yre00280  Valine, leucine and isoleucine degradation
yre00290  Valine, leucine and isoleucine biosynthesis
yre00300  Lysine biosynthesis
yre00310  Lysine degradation
yre00330  Arginine and proline metabolism
yre00332  Carbapenem biosynthesis
yre00340  Histidine metabolism
yre00350  Tyrosine metabolism
yre00360  Phenylalanine metabolism
yre00361  Chlorocyclohexane and chlorobenzene degradation
yre00362  Benzoate degradation
yre00364  Fluorobenzoate degradation
yre00380  Tryptophan metabolism
yre00400  Phenylalanine, tyrosine and tryptophan biosynthesis
yre00401  Novobiocin biosynthesis
yre00405  Phenazine biosynthesis
yre00410  beta-Alanine metabolism
yre00430  Taurine and hypotaurine metabolism
yre00440  Phosphonate and phosphinate metabolism
yre00450  Selenocompound metabolism
yre00460  Cyanoamino acid metabolism
yre00470  D-Amino acid metabolism
yre00480  Glutathione metabolism
yre00500  Starch and sucrose metabolism
yre00511  Other glycan degradation
yre00520  Amino sugar and nucleotide sugar metabolism
yre00521  Streptomycin biosynthesis
yre00523  Polyketide sugar unit biosynthesis
yre00525  Acarbose and validamycin biosynthesis
yre00540  Lipopolysaccharide biosynthesis
yre00541  O-Antigen nucleotide sugar biosynthesis
yre00542  O-Antigen repeat unit biosynthesis
yre00543  Exopolysaccharide biosynthesis
yre00550  Peptidoglycan biosynthesis
yre00552  Teichoic acid biosynthesis
yre00561  Glycerolipid metabolism
yre00562  Inositol phosphate metabolism
yre00564  Glycerophospholipid metabolism
yre00565  Ether lipid metabolism
yre00592  alpha-Linolenic acid metabolism
yre00600  Sphingolipid metabolism
yre00620  Pyruvate metabolism
yre00623  Toluene degradation
yre00625  Chloroalkane and chloroalkene degradation
yre00626  Naphthalene degradation
yre00627  Aminobenzoate degradation
yre00630  Glyoxylate and dicarboxylate metabolism
yre00633  Nitrotoluene degradation
yre00640  Propanoate metabolism
yre00650  Butanoate metabolism
yre00660  C5-Branched dibasic acid metabolism
yre00670  One carbon pool by folate
yre00680  Methane metabolism
yre00710  Carbon fixation by Calvin cycle
yre00720  Other carbon fixation pathways
yre00730  Thiamine metabolism
yre00740  Riboflavin metabolism
yre00750  Vitamin B6 metabolism
yre00760  Nicotinate and nicotinamide metabolism
yre00770  Pantothenate and CoA biosynthesis
yre00780  Biotin metabolism
yre00785  Lipoic acid metabolism
yre00790  Folate biosynthesis
yre00860  Porphyrin metabolism
yre00900  Terpenoid backbone biosynthesis
yre00907  Pinene, camphor and geraniol degradation
yre00910  Nitrogen metabolism
yre00920  Sulfur metabolism
yre00930  Caprolactam degradation
yre00946  Degradation of flavonoids
yre00997  Biosynthesis of various other secondary metabolites
yre00999  Biosynthesis of various plant secondary metabolites
yre01040  Biosynthesis of unsaturated fatty acids
yre01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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