PATHWAY: ysi01100 Help Entry ysi01100                    Pathway                                 Name Metabolic pathways - Yersinia similis Class BRITE hierarchy Pathway map ysi01100   Metabolic pathways Module ysi_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ysi01100] ysi_M00002   Glycolysis, core module involving three-carbon compounds [PATH:ysi01100] ysi_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ysi01100] ysi_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ysi01100] ysi_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:ysi01100] ysi_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ysi01100] ysi_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ysi01100] ysi_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:ysi01100] ysi_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ysi01100] ysi_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ysi01100] ysi_M00012   Glyoxylate cycle [PATH:ysi01100] ysi_M00015   Proline biosynthesis, glutamate => proline [PATH:ysi01100] ysi_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:ysi01100] ysi_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:ysi01100] ysi_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ysi01100] ysi_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:ysi01100] ysi_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:ysi01100] ysi_M00021   Cysteine biosynthesis, serine => cysteine [PATH:ysi01100] ysi_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:ysi01100] ysi_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:ysi01100] ysi_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:ysi01100] ysi_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:ysi01100] ysi_M00026   Histidine biosynthesis, PRPP => histidine [PATH:ysi01100] ysi_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:ysi01100] ysi_M00034   Methionine salvage pathway [PATH:ysi01100] ysi_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:ysi01100] ysi_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:ysi01100] ysi_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:ysi01100] ysi_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ysi01100] ysi_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ysi01100] ysi_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:ysi01100] ysi_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ysi01100] ysi_M00063   CMP-KDO biosynthesis [PATH:ysi01100] ysi_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:ysi01100] ysi_M00082   Fatty acid biosynthesis, initiation [PATH:ysi01100] ysi_M00083   Fatty acid biosynthesis, elongation [PATH:ysi01100] ysi_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:ysi01100] ysi_M00087   beta-Oxidation [PATH:ysi01100] ysi_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:ysi01100] ysi_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:ysi01100] ysi_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:ysi01100] ysi_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:ysi01100] ysi_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:ysi01100] ysi_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:ysi01100] ysi_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:ysi01100] ysi_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:ysi01100] ysi_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:ysi01100] ysi_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:ysi01100] ysi_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:ysi01100] ysi_M00149   Succinate dehydrogenase, prokaryotes [PATH:ysi01100] ysi_M00150   Fumarate reductase, prokaryotes [PATH:ysi01100] ysi_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:ysi01100] ysi_M00168   CAM (Crassulacean acid metabolism), dark [PATH:ysi01100] ysi_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:ysi01100] ysi_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ysi01100] ysi_M00417   Cytochrome o ubiquinol oxidase [PATH:ysi01100] ysi_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:ysi01100] ysi_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:ysi01100] ysi_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:ysi01100] ysi_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:ysi01100] ysi_M00555   Betaine biosynthesis, choline => betaine [PATH:ysi01100] ysi_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:ysi01100] ysi_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:ysi01100] ysi_M00621   Glycine cleavage system [PATH:ysi01100] ysi_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ysi01100] ysi_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:ysi01100] ysi_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:ysi01100] ysi_M00844   Arginine biosynthesis, ornithine => arginine [PATH:ysi01100] ysi_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:ysi01100] ysi_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:ysi01100] ysi_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:ysi01100] ysi_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:ysi01100] ysi_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:ysi01100] ysi_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:ysi01100] ysi_M00918   Aerobactin biosynthesis, lysine => aerobactin [PATH:ysi01100] ysi_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:ysi01100] ysi_M00970   Proline degradation, proline => glutamate [PATH:ysi01100] Organism Yersinia similis [GN:ysi] Related pathway ysi00010   Glycolysis / Gluconeogenesis ysi00020   Citrate cycle (TCA cycle) ysi00030   Pentose phosphate pathway ysi00040   Pentose and glucuronate interconversions ysi00051   Fructose and mannose metabolism ysi00052   Galactose metabolism ysi00053   Ascorbate and aldarate metabolism ysi00061   Fatty acid biosynthesis ysi00071   Fatty acid degradation ysi00130   Ubiquinone and other terpenoid-quinone biosynthesis ysi00190   Oxidative phosphorylation ysi00220   Arginine biosynthesis ysi00230   Purine metabolism ysi00240   Pyrimidine metabolism ysi00250   Alanine, aspartate and glutamate metabolism ysi00260   Glycine, serine and threonine metabolism ysi00261   Monobactam biosynthesis ysi00270   Cysteine and methionine metabolism ysi00280   Valine, leucine and isoleucine degradation ysi00290   Valine, leucine and isoleucine biosynthesis ysi00300   Lysine biosynthesis ysi00310   Lysine degradation ysi00330   Arginine and proline metabolism ysi00332   Carbapenem biosynthesis ysi00340   Histidine metabolism ysi00350   Tyrosine metabolism ysi00360   Phenylalanine metabolism ysi00361   Chlorocyclohexane and chlorobenzene degradation ysi00362   Benzoate degradation ysi00364   Fluorobenzoate degradation ysi00380   Tryptophan metabolism ysi00400   Phenylalanine, tyrosine and tryptophan biosynthesis ysi00401   Novobiocin biosynthesis ysi00410   beta-Alanine metabolism ysi00430   Taurine and hypotaurine metabolism ysi00440   Phosphonate and phosphinate metabolism ysi00450   Selenocompound metabolism ysi00460   Cyanoamino acid metabolism ysi00470   D-Amino acid metabolism ysi00480   Glutathione metabolism ysi00500   Starch and sucrose metabolism ysi00511   Other glycan degradation ysi00520   Amino sugar and nucleotide sugar metabolism ysi00521   Streptomycin biosynthesis ysi00523   Polyketide sugar unit biosynthesis ysi00525   Acarbose and validamycin biosynthesis ysi00540   Lipopolysaccharide biosynthesis ysi00541   O-Antigen nucleotide sugar biosynthesis ysi00542   O-Antigen repeat unit biosynthesis ysi00543   Exopolysaccharide biosynthesis ysi00550   Peptidoglycan biosynthesis ysi00552   Teichoic acid biosynthesis ysi00561   Glycerolipid metabolism ysi00562   Inositol phosphate metabolism ysi00564   Glycerophospholipid metabolism ysi00565   Ether lipid metabolism ysi00591   Linoleic acid metabolism ysi00592   alpha-Linolenic acid metabolism ysi00600   Sphingolipid metabolism ysi00620   Pyruvate metabolism ysi00623   Toluene degradation ysi00625   Chloroalkane and chloroalkene degradation ysi00626   Naphthalene degradation ysi00627   Aminobenzoate degradation ysi00630   Glyoxylate and dicarboxylate metabolism ysi00633   Nitrotoluene degradation ysi00640   Propanoate metabolism ysi00650   Butanoate metabolism ysi00660   C5-Branched dibasic acid metabolism ysi00670   One carbon pool by folate ysi00680   Methane metabolism ysi00710   Carbon fixation by Calvin cycle ysi00720   Other carbon fixation pathways ysi00730   Thiamine metabolism ysi00740   Riboflavin metabolism ysi00750   Vitamin B6 metabolism ysi00760   Nicotinate and nicotinamide metabolism ysi00770   Pantothenate and CoA biosynthesis ysi00780   Biotin metabolism ysi00785   Lipoic acid metabolism ysi00790   Folate biosynthesis ysi00860   Porphyrin metabolism ysi00900   Terpenoid backbone biosynthesis ysi00907   Pinene, camphor and geraniol degradation ysi00910   Nitrogen metabolism ysi00920   Sulfur metabolism ysi00930   Caprolactam degradation ysi00946   Degradation of flavonoids ysi00997   Biosynthesis of various other secondary metabolites ysi00999   Biosynthesis of various plant secondary metabolites ysi01040   Biosynthesis of unsaturated fatty acids ysi01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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