Phocoenobacter atlanticus: KGI96_02495
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Entry
KGI96_02495 CDS
T07499
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
patl
Phocoenobacter atlanticus
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
patl03016
]
KGI96_02495
Enzymes [BR:
patl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KGI96_02495
Transfer RNA biogenesis [BR:
patl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KGI96_02495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QVE21281
LinkDB
All DBs
Position
549765..551747
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AA seq
660 aa
AA seq
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MFQDNPLLAQLKQQMHSNKTFVEGFVKATDKSYGFLECDKKSYFIPPQEMKKVMHGDKVK
ASVVVDGDKERVDVEELIEPMLTRFVARVKFNREGRLQLAVDHPNVKPLISANVNNNKVT
QKLQENDWVVAELKTHPLRDDRFLFAQVTQFICEAEDHYAPWWVSLIRHEQPREAVKGLE
SYELQDEIERKDLTDLNFTTIDSGTTKDMDDALCIEPILENNTQTGWRLMVAIADPTAYI
PQNSSLEKEARQRCFTNYLPGFNIPMLPRELSDDLCSLVADEKRPALVGEIITDLQGNVT
AETVFTLAWVKSKAKLAYDNVSDYLEQQENAWQPENEIVKQQIDWLHQFTQARMQWREKN
ALIFKEQGDYAFELNEQGDVVDIHLEPRRIANQMIEEAMIIANIEAGKYLEKNAKTGIFN
THLGFDPKNYKLAKEFLIATLGTPENSEELEARYSVERLATLEGYCEMRRDIDQHDESFL
ELRLRRYLTFAEFKNQAAPHFGLGITHYATWTSPIRKYGDMVNHRLIKQTLAKQPTQPVE
EDILARLQEARKQNRMVERDISDWLYARYLEPMVEKNIEFEAEISDVSRGGLRVKVIENG
AMIFVPNSTLHPNKDEMNFRQEELALYIKDEKAYQVGQRVKVKLTQVRMETRSIIGNIVE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataaccctctgttagcacaacttaaacaacaaatgcactctaataaaact
ttcgttgaaggttttgtaaaagccactgataaaagctatggttttttagaatgcgataaa
aaaagttactttatcccaccccaagaaatgaaaaaagtaatgcacggcgataaagtaaaa
gcctctgttgtagttgatggcgacaaagaacgcgttgatgttgaagaattgattgagcct
atgctgacacgttttgtggcaagggttaaatttaatcgagaggggcgtttacaacttgca
gttgatcatccaaatgtgaaaccgctaatttctgctaatgtaaacaataacaaggtaacg
caaaaattacaggaaaatgactgggttgttgcagaattaaaaacacatcctttacgagat
gatcgttttttatttgctcaagtcacccaatttatttgcgaagcagaagatcattatgca
ccttggtgggtgagtcttattcgtcacgaacaaccccgtgaagcagtaaaagggttagaa
agttatgagttgcaagatgaaattgaacgtaaagatttaacggatttaaattttaccact
attgattcaggaacaaccaaagatatggacgatgcgttgtgtattgagccaatccttgaa
aataacacccaaacaggatggcgtttaatggtggcgattgccgatccaactgcttatatc
ccacaaaattcaagccttgaaaaagaagctcgtcaacgttgttttaccaattatttaccg
ggttttaatattccaatgctacctcgtgaactttctgatgatttatgttcattggttgcg
gatgaaaaacgtcctgcattagtaggcgaaattattactgatttgcaagggaatgttaca
gcagaaaccgtctttacccttgcgtgggtgaaatcaaaagctaaattggcttatgacaac
gtatctgattatttagaacagcaagaaaatgcgtggcaacctgaaaacgagattgtaaaa
caacaaattgactggttacaccaatttacccaagcaagaatgcaatggcgtgagaagaat
gcgttaattttcaaagagcaaggcgattatgcttttgaattaaatgagcagggagatgta
gtcgatattcatcttgaacctcgtcgcattgcgaatcaaatgattgaagaagcgatgatt
atcgccaatattgaagcgggtaaatatttagaaaaaaatgcaaaaacagggattttcaac
acccatttaggttttgatcctaaaaattacaaacttgccaaagagtttttaatcgccacc
ttaggtacgcctgaaaacagtgaagaattagaagcacgttatagtgttgagcgtttagcg
acgcttgaaggttattgtgaaatgcgtcgtgatattgaccaacacgatgagagcttttta
gaattacgtttacgtcgttatctgacttttgcagaatttaaaaatcaagctgcaccacat
tttggtttagggattacccattatgcgacttggacatcaccaatcagaaaatatggcgat
atggtaaatcatcgtttaatcaaacaaacccttgcaaagcagccaacacaacctgtagaa
gaagatattttggctcgtttacaagaagcccgtaaacaaaaccgaatggtagagcgagat
atttcagattggctatatgcccgttaccttgaaccaatggtagagaaaaatatagaattt
gaggcagaaatcagtgacgtttctcgtggtggattacgtgttaaagtgattgaaaacggt
gcaatgatttttgtgccaaactccacattgcatccaaataaagatgaaatgaacttccga
caagaagagctagctctttatatcaaagatgaaaaagcctatcaagttgggcaaagagtt
aaagtcaaattaactcaagttcgtatggaaacaagaagtattattgggaatattgtggaa
taa
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