Phocoenobacter atlanticus: KGI96_03095
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Entry
KGI96_03095 CDS
T07499
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
patl
Phocoenobacter atlanticus
Pathway
patl03410
Base excision repair
patl03430
Mismatch repair
patl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KGI96_03095 (recJ)
03430 Mismatch repair
KGI96_03095 (recJ)
03440 Homologous recombination
KGI96_03095 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
patl03400
]
KGI96_03095 (recJ)
DNA repair and recombination proteins [BR:
patl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KGI96_03095 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KGI96_03095 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KGI96_03095 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF5390
SAGA-Tad1
Motif
Other DBs
NCBI-ProteinID:
QVE21384
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All DBs
Position
668086..669804
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AA seq
572 aa
AA seq
DB search
MSLNKIIQQRFPLTTEKLSDNPLLNRLYQARGISLPQQLEYGLKNLHSPMQFANIEKMLD
LLIEIYHQQKKIIIVGDFDADGATSTALTLLALKQLGFLDVDYLIPDRFSQGYGLSSSVA
QMVIDRGAEVVITVDNGISSVEGVALLKQHHIQVLITDHHLPPDELPCADVIINPNLVDC
SFPSKSLAGVGVIFYVMLALRSRMREQNLFKDQEPNLAGLLDLVALGTVADVVPLDHNNR
ILVHQGINRIRSGYCRVGIKALVEIAKRNINQLKASDLGFSIAPRLNAAGRLENMALGVE
LLICDDMSKARQIAFELDSLNQTRKEFEQDMKTEALSICAKLPNLMQNLKAYGIVLYQPD
WHQGVIGILASRIKDQFNRPVIAFAQESEESEFIKGSARSISGLHMRDLLELIDQKHPDL
ILKFGGHAMAAGLTIHQDNFVHFQKVFDEIINQTVSAEQLQNIIYTDGELQQNEFNLETA
RLIQESGPWGQTFPEPLFEGEFKIIQQRLVGSKHLKMMVEIHNQLFDAILFNADLTLFPD
LSIKTARLVYSLDINEFRGNTSLQLLVREIFV
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtcattaaataaaatcatacaacaacgctttcctcttacaacagaaaaactatctgat
aatccattacttaatcgtctttatcaagctcgaggtattagcttacctcaacaattagaa
tatgggttaaaaaatctacattctccaatgcaatttgccaatattgaaaaaatgctcgat
ctattgattgaaatttatcatcaacagaaaaaaattattattgtgggcgattttgatgcc
gatggagcaactagtacagcattaacattattagcattaaagcagcttggctttttagat
gttgattatttgatccctgatcgtttttcacaaggttatggattgagtagcagtgtcgct
caaatggtaatagataggggcgcagaagttgttattacagtagataacggtatttcttca
gtggaaggggttgctctattaaaacaacatcatattcaagtgctgattactgatcaccat
ttacctccagatgaattgccttgtgctgatgtgattatcaatccaaatttagttgactgt
agctttccttctaaatcattggcgggtgtgggcgttattttttatgtaatgttagcgttg
cgtagtcgtatgcgtgaacaaaatttatttaaagatcaagaacccaatttagctgggttg
ttagatttagttgcattagggacggtagctgatgttgtgcctttagatcacaataatcga
attttagtgcatcaaggcattaatcgtattcgttctggttattgccgagtaggaataaaa
gccttagttgaaattgcaaaacgaaatattaaccagttaaaagccagtgatttaggattt
tcgattgcccctcgtttaaatgctgcagggcgtttagaaaatatggcgttaggtgtggaa
ttattgatttgtgatgatatgagcaaagcacgtcaaattgcgtttgaattggatagttta
aatcaaacacgtaaagaatttgagcaagatatgaaaacggaagctctttcaatttgtgca
aaactgcctaatttaatgcaaaatttaaaagcatacggtattgtgctttatcaacctgat
tggcatcaaggtgtgattggtattttagcttctcgtatcaaagatcagtttaatcgccct
gtcatcgcctttgcacaagaaagtgaggagagtgaatttattaaaggatcggcacgttcg
atttctggtttacatatgcgtgatctattggagcttattgatcaaaaacaccctgatctt
attctgaaatttggcggtcacgcaatggcggcgggattaactattcatcaagataatttt
gtgcattttcaaaaagtctttgatgaaatcattaaccaaacagtcagtgcggaacagtta
caaaatattatttataccgatggtgagttacaacagaatgaatttaatttagaaacagca
cgtttaattcaagaaagtggaccttggggacaaacttttcctgaaccactttttgaaggt
gaatttaaaattattcaacaacgtttagtgggcagtaagcaccttaaaatgatggtagaa
attcataatcaattatttgatgcgattttatttaatgcagatttaaccctgtttccagat
ttgtcgattaaaacggctcggttagtatatagtttagatattaatgaatttagagggaat
accagtttacagctactggtcagagaaatttttgtttaa
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