Phocoenobacter atlanticus: KGI96_03310
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Entry
KGI96_03310 CDS
T07499
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
patl
Phocoenobacter atlanticus
Pathway
patl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KGI96_03310 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
patl03400
]
KGI96_03310 (recD)
Enzymes [BR:
patl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KGI96_03310 (recD)
DNA repair and recombination proteins [BR:
patl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KGI96_03310 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
SH3_13
AAA_22
nSTAND3
IgD2_Trs65
UvrD_C
ATPase
NTPase_1
CbiA
FtsK_SpoIIIE
AAA
AAA_16
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QVE21423
LinkDB
All DBs
Position
complement(718056..720002)
Genome browser
AA seq
648 aa
AA seq
DB search
MLCLLECLKEQKIISELDYQFAKMINQKQQPYGYSQQVQDLAIFLSAFVSYNVMQGNTAL
DLHSPLANNPFGLKNKILEEDFYSQILQKIENITPLDWQNRLQHHIAFSDNPSKVAPMLF
QHNLLYFYRYWQSENRIVSYLKQAVTFEQEFAKNDLNHTALTQLFTEQTPHIDWQKIAVA
TALTKNFTLISGGPGTGKTTTVVKILLALQLKQQYSNLPPLNIKLAAPTGKATARLKESI
SDNLARFPFSDELKAQIPTNALTLHRLLGINPMSDMPKYNQHNPLYLDVLVVDEASMIDL
SLMEKMINALKPNAHLIMLGDKDQLASVEAGAIMGELGTFITKGYSAKHCQYLTQNTGYT
LLPQQDNPPIIGDSLCHLRHSFRFNQNAGIGEISRTINSQQAVTSWQLFTKFTDLDLIEY
QAATQFSEKSKWIEHNVKLIVDKAVSLYESYLKLVKQRTETPSAVNVEDIFNTFNKIRLL
SALRVGEFGVEKLNERIAQALLKAGLIHFHHSRENYLGKPIMITENIPQAHIYSGDIGLI
LADENGKSRVYFETQINNQPHSITPNRLPNYETAYVMTVHKSQGSEFEHTVLILPLNYSP
IITKELLYTAVTRAKKHFTLFSNEKVWKQGVNSKIQRQSGLAKQLTHN
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgtttattagaatgtttgaaagaacaaaaaattatcagtgaattggattatcag
tttgcaaaaatgattaaccaaaaacaacaaccttatggatatagccaacaagtgcaagat
ctagctatctttttgagtgcttttgtttcttacaacgtaatgcaaggtaatactgcctta
gatcttcattctcctctagccaataatccttttggtctaaaaaacaaaattttagaagaa
gacttttatagtcaaattttgcaaaaaatagaaaatatcacaccgcttgattggcaaaat
agattacaacatcatatcgcctttagtgacaatccatcaaaagtagcaccgatgttattt
cagcataacctactttatttttaccgttattggcaatcggaaaatcgtattgtcagttat
cttaaacaagcggtaacttttgaacaagaatttgcaaaaaatgatcttaatcataccgct
ttaacacaactttttacggaacaaacaccgcatattgattggcagaaaattgctgttgca
actgcattaactaaaaatttcacccttatttcaggtggaccaggaacaggaaaaaccacg
actgtggttaaaattttgcttgccttacagttaaaacaacagtattcaaatttaccccca
cttaatattaaacttgctgccccaacaggaaaagcgaccgctcgtttaaaagaatctatc
agtgataatttggcaagatttcccttttctgatgagctgaaagctcaaattccgacaaat
gcattgacactacatcgtttacttggcattaatccaatgagtgatatgccaaaatataat
caacataatccattatatttagatgtcctcgtcgtggatgaagcctcaatgattgattta
tccctaatggaaaaaatgatcaatgccttaaaacccaatgctcatttaataatgctagga
gataaagatcagctggcatctgttgaagcaggagccataatgggagagcttggcactttt
attaccaagggttattcagcaaaacattgtcaatatttaactcaaaatacgggttataca
ttacttcctcaacaggataatcccccaattattggtgactcactgtgccatttaagacac
agtttccgttttaatcaaaatgcaggaattggtgaaattagccgaacaataaacagccag
caagcggttacatcttggcaactttttacaaaatttactgatcttgatttaattgaatac
caagctgccacacagtttagtgaaaaatcaaaatggatagaacacaatgttaagctaatt
gtagacaaagcagtgagcttatatgaaagctatttaaaattagtaaaacaacgcacagaa
accccttcagcagttaatgttgaagatatttttaatacgtttaataaaatacgcttgctc
tcagccctgcgggtgggtgaatttggggtagaaaaattaaatgagcgtatcgctcaagca
ttacttaaagcaggtttaatacattttcaccatagccgtgaaaactatcttggcaaaccc
attatgattacagaaaatatccctcaggctcatatttacagtggcgatataggattaata
ttagccgatgaaaacggtaagtcacgtgtttattttgaaacgcaaattaacaaccaacct
cacagtattacccctaaccgcttgccaaattacgaaacagcttacgtaatgacagtgcat
aaatctcaaggttcagagtttgaacatactgtacttattttaccgttaaattattcacca
attatcaccaaagaattgctttatactgcggttactcgtgcaaaaaaacactttactctc
tttagcaatgaaaaagtgtggaaacaaggtgtgaatagtaaaattcagcgacaaagtggt
ttggcgaaacaacttactcataattaa
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