Phocoenobacter atlanticus: KGI96_04200
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Entry
KGI96_04200 CDS
T07499
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
patl
Phocoenobacter atlanticus
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
patl03032
]
KGI96_04200 (topA)
03400 DNA repair and recombination proteins [BR:
patl03400
]
KGI96_04200 (topA)
Enzymes [BR:
patl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KGI96_04200 (topA)
DNA replication proteins [BR:
patl03032
]
Prokaryotic type
DNA Topoisomerases
KGI96_04200 (topA)
DNA repair and recombination proteins [BR:
patl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KGI96_04200 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF4795
Motif
Other DBs
NCBI-ProteinID:
QVE21592
LinkDB
All DBs
Position
complement(902359..905004)
Genome browser
AA seq
881 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDYVVKSSVGHIRDLPTTGSSSGEKAKAISTKGMTAEQ
KAKIKAEKDRKALVKRMGIDPYHDWEPNYQVLPGKEKVVSDLQAQAKKADHIYLATDLDR
EGEAIAWHLREVIGGDDSRFSRVVFNEITRNAIQKAFETPKHLNMDRVYAQQTRRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFLPEEFWEVATQNTAKNGAIT
LDLTHFKGKKWSAKNKQEADQTVKALQSSAFVVSKVDKKPTSSKAKPPFITSTLQQSAST
RLGFGVKKTMMLAQRLYEAGYITYMRTDSTSLSQDALTMARGYIESKFGTDYLPEKPNIY
SSKGNAQEAHEAIRPSNVATKSSDLVAIDKDAVRLYELIWRQFLACQMTAAKYDSTSLTI
TAGEYELKAKGRVLRFDGWTKVQPLLGKSAEDQVLPELTLNEVLTLNKVIPTQHFTKPPA
RFSEAALVKELEKKGIGRPSTYAAIISTIQERGYVRVENRRFYAEKMGEIVIDRLDESFS
ELMNYDFTANMEDTLDQIASGNSNWKQELDRFFKDFSEKLTKAELDELEGGMRPNNIVEI
DVACPDCQRNMSIRTASTGVFLGCTGYALPPKERCKKTINLIPEAELLNVLDEDSETNAL
LHRKRCPKCDTAMDSYLVDPERKLHICGNNPNCDGYMIEQGSFKIKGYEGPIVECDKCDA
EMHLKLGRFGKYMACTKCENTRKILKNGEVAPPREEPTHFPELKCEKSDAYFVLRDGASG
VFMSAHNFPKSRESRSPKVAELAQFKDRLPEKLRYLADAPQKDPEGNEAIIRFSRKEKRQ
YVTSEKEGKATKWLVDYIDGKWVERVTKTKAKVKTTTKKKK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcattagtaattgtggagtctccagcaaaagccaaaacaatcaataaatat
ttaggcaaagactacgtggtgaaatcaagtgtagggcatattcgtgatttacccaccact
ggcagtagctctggtgaaaaagcaaaagcgatttcaacgaaaggaatgaccgccgagcag
aaagcaaaaattaaagcagaaaaagaccgtaaagcattagtcaaacgaatggggattgac
ccttatcacgattgggaaccgaattatcaggttttaccgggtaaagaaaaggtcgtttca
gatttacaagcccaagccaaaaaagccgatcatatctatctcgcaaccgatttggataga
gaaggggaagccattgcgtggcatttacgtgaagtgatcggcggtgatgatagtcgtttt
agtcgagtggtgtttaatgaaattacacgtaatgctattcagaaagcctttgagacccct
aaacatttaaatatggatcgcgtctatgcacaacaaacaagacgtttcttagaccgtgtg
gtgggctttatggtgtctccattactatggaaaaaagtcgccagaggattatcggctgga
cgagtgcaatctgttgccgtaaaacttttagttgagcgtgaacgtgaaattaaagccttt
ttacctgaagaattttgggaagtggctacacaaaataccgcaaaaaatggggcaatcact
ttagatttaacccattttaaaggtaaaaaatggtcagcgaagaataaacaagaagcagac
caaacggttaaagcattacaatctagtgcttttgtggtgagtaaagtggataaaaagccg
acttcatcaaaagcaaaaccgccttttattacgtcaaccttacaacaaagtgccagtaca
cgtttaggttttggggtaaagaaaacaatgatgttagctcagcgtttatatgaagcaggg
tatatcacctatatgcgtaccgactccacgagtttaagtcaagatgcgttaacgatggct
cgtggttatattgaaagtaaatttggtacggattatttgcctgaaaaaccaaatatttat
tccagtaaaggcaatgctcaagaggctcacgaagcgatacgtccgtcaaatgtagcaaca
aaatccagtgacctagtggcaatagataaagatgcagtacgtttatatgagttaatttgg
cgacaatttttagcctgtcaaatgacagcagcaaaatatgattctacaagcttaaccatt
actgcaggggagtatgaactaaaagccaaaggacgagtattacgttttgatggttggaca
aaagtacaacctttattaggtaaatcagcagaagatcaagttttacccgaattaacccta
aatgaagtattaactttaaacaaagtcataccaacacaacattttaccaaaccgcctgca
cgttttagcgaggcagcattagtaaaagaattagagaaaaaagggattggtcgtccttca
acttacgcagcgattatttccaccattcaagagcgtggttatgttcgtgtagaaaatcgt
cgtttttatgcagagaaaatgggcgaaattgtgattgatcgtttagatgaatcattcagc
gaattgatgaattatgattttacggcaaatatggaagatacccttgatcaaattgcctca
ggaaatagcaattggaagcaggaattagaccgtttctttaaagatttttcagaaaaactc
actaaagcagaactagatgaattagaaggcggaatgcgtccgaataatatcgtcgaaatt
gatgtggcttgccctgattgtcagcgtaatatgtctattcgtaccgcaagtacaggggtt
ttcttaggttgtacaggttatgcattgccaccgaaagagcgttgtaaaaaaacaatcaat
ttaattccagaagcggaattattgaacgtattagatgaagattcagaaactaacgcatta
ttacaccgtaaacgttgcccgaaatgtgataccgcaatggatagctacttagtggatcct
gaacgtaaattacatatttgtggtaataatcccaattgtgatggttatatgattgaacaa
ggttcatttaaaattaaaggctatgagggtccgattgttgagtgtgataagtgtgatgcg
gaaatgcacctaaaattagggcgttttggtaaatatatggcgtgtaccaaatgtgaaaat
acccgtaaaattcttaaaaatggtgaagtggcgcctcctcgtgaagaaccaacccatttc
ccagaattaaaatgtgaaaaatcggatgcgtattttgtactgcgtgatggggcgagtggt
gtatttatgtcggcacataatttccctaaatctcgtgaaagtcgctcaccaaaggtggca
gaattagcacagtttaaagatcgattacctgaaaaattacgttatctagcagacgcacct
caaaaagatcctgagggtaacgaagccattattcgcttcagccgtaaagaaaaacgtcaa
tatgtgacttctgaaaaagagggcaaagccactaaatggctggtggactatattgacggt
aagtgggtggaaagagtaactaaaacaaaagctaaagtaaaaactaccacgaagaaaaag
aaataa
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