Phocoenobacter atlanticus: KGI96_06160
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Entry
KGI96_06160 CDS
T07499
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
patl
Phocoenobacter atlanticus
Pathway
patl03030
DNA replication
patl03430
Mismatch repair
patl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KGI96_06160 (dnaE)
03430 Mismatch repair
KGI96_06160 (dnaE)
03440 Homologous recombination
KGI96_06160 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
patl03032
]
KGI96_06160 (dnaE)
03400 DNA repair and recombination proteins [BR:
patl03400
]
KGI96_06160 (dnaE)
Enzymes [BR:
patl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KGI96_06160 (dnaE)
DNA replication proteins [BR:
patl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KGI96_06160 (dnaE)
DNA repair and recombination proteins [BR:
patl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KGI96_06160 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QVE19962
LinkDB
All DBs
Position
1306226..1309699
Genome browser
AA seq
1157 aa
AA seq
DB search
MSNPRFIHLRVHSDFSIIDGLAKVKPLIKTCVDNDMPAIALTDFCNFCGLVKFYGEAQNS
GVKPIIGIDILVRATPDTEEYDELTLLAKNNIGYQNITLLISKAYQQGYIEFPIIEKAWL
AELNEGIIVLSGGRNGDIGKALLKENPQDADKKIAFYQQYFPNHYYLSLCRTSRNDEERY
IQHTILFSQKHQIPLVAVNDVCFLKEEDFEAHEIRVAIHDAYTLDDPKRPQKYSEKQYFR
TEQEMCELFADIPQAIENTVHIAQRCNVTIRLGEYFLPNFPTGDLTPEDFLVQKSQQGLE
ERLAFLFPDPKERAEKRVDYDERLQIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG
RGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEHVSQM
YGSKAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPLDPGMTLAKAFEAEPKL
PELYETDEEVKSLIDMARKLEGVIRNAGKHAGGVVIAPNAITDFSPLYCDSEGQHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLKKEGKDPINIESIPLDDKTSFDLLL
KAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLGSGMVENFIDRKHGREEV
SYPDVKYQHDSLKTILEPTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA
KQRSVFKEGAEKNNVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE
FMAAVMSSELDNTDKLVGFYDECINMGLTVVPPDVNSGQHRFSVNEKGEIVYGLGAIKGV
GEGPVEAILEARKKEGIFKDLFDLTARIDLKKINRRTFEALIMSGAFDNLGPHRAAIMKN
LEDALKAADQHSKMEALGQTDMFGILTETPEEVQSAYANTPKWTEQVILEGEKNTLGLYI
SGHPIGRFLKELSHYSSIRLNELQPTPRGKTVTVAGLIMNSRIAVTKKGNRIGIATIEDR
SGKLDITLFSEALEQYGVLLEKDKIIIVTGSVQFDNYNNGFRMLVREIISLDEARSRYAK
SLALAINQQQITPDFIKKLTQIIAPNKEGTLPLHFYYQSPQAKALIKSGVEWRITPNNEM
IEQLQNLLGESAVELEF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcctcgttttattcatttacgtgttcacagtgatttttcaatcattgatggt
ttagccaaagtgaaaccacttatcaaaacctgtgtcgataatgatatgccagccattgca
ctcactgatttttgtaatttttgtggcttagtgaaattttatggtgaagcacaaaattca
ggggttaaacctattattggtatagatattttggtacgagcaacgccagataccgaagag
tacgatgaactcaccttattagcaaaaaataacattggctatcaaaatatcaccttgctg
atctcgaaagcctatcaacaaggctatattgaatttcctattattgaaaaagcgtggtta
gcagaactgaatgagggcattattgtgctttctggtggtcggaatggggatattggaaaa
gcattattaaaagaaaatccacaagatgctgataaaaaaatcgccttttatcaacaatat
ttccctaatcattactacttatcattatgtcgtacctctcgcaatgatgaagagcgttat
attcaacacaccattcttttttctcaaaaacatcaaattccattagtggcagtcaatgat
gtctgtttcttaaaagaagaggattttgaagcacacgaaattcgagtggctattcacgat
gcttatactttagatgatcctaaacgtcctcaaaaatactcagaaaaacagtatttcaga
acggaacaagaaatgtgtgaattatttgcagatattccacaagccattgaaaataccgta
catattgctcagcgttgtaatgtcactattcgtttaggtgaatattttttacccaatttc
ccaacaggtgatcttacacctgaagattttttagtacaaaaatcacagcaaggattagaa
gaacgtttagcctttttatttcctgatcctaaagaacgtgcggagaagcgggtagattat
gacgaacgtttgcaaattgaacttgaagttatcaaccaaatgggctttcccggttatttc
ttaattgtaatggaatttattcaatggtcaaaagataatggagtccctgttggtcccggg
cgaggttctggtgcaggctcactggttgcttatgccttaaaaatcaccgatcttgatcca
cttcaatttgatttactttttgagcgttttttaaatcctgaacgtgtttctatgcctgat
tttgatgtcgatttctgtatggaaggacgagatcgtgtgattgaacacgtatcacaaatg
tatggaagtaaggcagtctctcaaattattacttttggaacaatggcagcaaaagccgtt
attcgagatgtaggacgagtactcggacatccttatagctttgtagatcgtatttctaaa
ctaattccactcgatccaggtatgaccctagcaaaggcttttgaagcagaaccaaaattg
cctgaactttatgagacagatgaagaagttaaatccttaattgatatggctcgcaaactt
gagggtgtaattagaaatgcaggaaaacacgcgggaggcgttgttattgcaccaaatgcc
attacagatttctcccctctttattgtgatagtgaagggcaacaccctgttacgcatttt
gataaaaatgatgttgaatatgcaggtttagttaaatttgactttttaggtttacgcact
cttactattataaaatgggcattagaaatgattaatgctcgtttgaaaaaagaggggaaa
gatcctattaatatagaaagtattcctcttgacgataaaacttcttttgatttactgtta
aaagctaaaactaccgctgtttttcagctcgaatctcgtggaatgaaagatttgatttca
cgcttaaaaccagactgctttgaagatattatcgcactagtagcgctcttccgccctggt
ccactcggttcgggaatggttgagaactttattgatcgtaaacacggtcgagaagaggtc
tcttatccagatgtaaaataccaacacgatagcctaaaaaccattttagaaccaacctat
ggcgttattttatatcaagaacaagtaatgcaaattgctcaggtattagcaggttacacc
cttggtggagcagatttattgcgtcgtgcaatgggtaagaaaaaaccagaagaaatggca
aaacaacgttctgtctttaaagaaggggctgaaaaaaataacgttgatggcgagttggcg
atgaaaatctttgacttggtagaaaaatttgcaggttacggatttaataaatcgcactca
gctgcttatgcgttagtctcttatcaaaccttgtggttgaaagcccattatccagcagaa
tttatggcagcagtaatgagttcagaattggataatacggataaactcgtaggtttctat
gatgaatgtatcaatatgggtttaaccgttgtaccaccagatgtaaattcaggacagcat
cgctttagtgtcaacgaaaaaggtgaaattgtttatggacttggtgcaatcaaaggagtt
ggagaaggtcctgttgaagcaatacttgaagcacgtaaaaaagagggtattttcaaagat
ctttttgatttaaccgctcgcattgatctaaaaaaaatcaaccgtcgtacttttgaagcg
ttaataatgtctggtgcttttgataatctaggtccacatcgtgccgctataatgaaaaat
ttagaagatgctctaaaagcggcagatcagcacagtaaaatggaagcattgggacaaaca
gatatgtttggtattctaacagaaacacctgaagaagttcaaagtgcttatgcgaatacc
ccaaaatggacagaacaagttattttagaaggtgaaaaaaatacactgggtttatacatt
agtggacatccgataggacgctttttaaaagagttatctcattattcatcgatacgttta
aacgaattacaaccaaccccaagaggtaaaactgtcacagtcgcaggattgattatgaat
tcacgtattgcggttaccaaaaagggaaaccgaataggtattgcgaccattgaagatcga
tctggaaaattagatatcaccctattttctgaagctcttgagcaatatggcgttttatta
gaaaaagataaaattattattgttactggctctgtacaatttgataattataataatggt
tttagaatgttggtacgtgaaattattagccttgatgaagctcgtagtcgttatgctaaa
agcttagcattagcaataaaccaacaacagattacaccagattttataaaaaaactcacc
caaattatagcgccaaataaagaaggaacattaccactacatttctattaccaaagccct
caagcaaaagcattaataaaaagtggtgttgaatggcgaataacacctaacaacgaaatg
attgaacaacttcaaaacttattaggtgaaagtgccgttgaattagagttttga
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