Phocoenobacter atlanticus: KGI96_06355
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Entry
KGI96_06355 CDS
T07499
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
patl
Phocoenobacter atlanticus
Pathway
patl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGI96_06355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
patl03019
]
KGI96_06355
Enzymes [BR:
patl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KGI96_06355
Messenger RNA biogenesis [BR:
patl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KGI96_06355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UvrD-helicase
Rubella_Capsid
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QVE19997
LinkDB
All DBs
Position
complement(1350452..1351657)
Genome browser
AA seq
401 aa
AA seq
DB search
MIQFNQLGLSAPILKAVTEQGYETPTPIQQQSIPAVLLGKDLMAAAQTGTGKTAGFTLPI
LEILSKGQSAKSNQARALILTPTRELAAQIAENVSLYGQYLSLKSAVVFGGVKINPQMQK
LCKGADILVATPGRLLDLHQQNAIHFDQLEILVLDEADRMLDMGFIHDIKRIIKLLPPKR
QNLLFSATFSDEIRTLAKGIIRNPVEISVSPENTTAEKVSQVIYPVDKKSKPTLLIKLIK
DNNWDQVLVFTRTKHGANKLTKQLDKENIPASAIHGSKSQGARTRALAEFKAGDIQVLVA
TDIAARGIDIDLLPHVVNFDLPNVAEDYVHRIGRTGRAGSSGKAVSLVCADELDDLKGIE
RLIQQVLPREIIKGFEPQNALATTVLDTRPIKKRPKKKKFK
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
ttgatacaatttaatcaacttgggttatctgccccaatcttaaaagcagtgactgagcaa
ggctatgaaaccccaaccccaattcaacaacaatcaatcccagccgtgcttttggggaaa
gatcttatggccgctgctcaaacgggtacaggaaaaacggcagggtttactcttcctatt
ttagagattttatctaaaggacaatcagcaaagtcaaatcaagcaagagcgttaatttta
actccaactcgagagttagcggctcaaatagcggaaaatgttagtctttatgggcagtat
ttatcacttaaatcagccgttgtctttggtggagtaaaaattaatcctcaaatgcaaaaa
ttatgtaaaggtgcagatattttggttgcgacaccaggacgattactcgatttacatcaa
caaaatgctattcattttgatcaattagaaatattagtattagatgaagctgatcgaatg
ttagatatgggatttattcacgatattaagagaattatcaaactattaccacctaagcgt
caaaatttattattttcagcaacattttctgatgaaatccgcactcttgcaaaagggatt
attcgaaatcctgttgaaatttcagtttcaccagaaaatacaacggcagagaaagtgagc
caagtgatttacccagtggataagaaaagtaaaccaacattactgatcaaattgattaaa
gataataattgggatcaagtactggtttttactcgtaccaaacacggggcaaataaatta
accaagcaacttgataaagaaaatatacccgcgtcagctattcacggaagcaaaagtcaa
ggtgcaagaacgcgtgcattagcagaatttaaagcaggcgatattcaagttttggttgca
acagatattgctgccagaggaattgatattgatttattacctcacgttgtcaattttgat
ttacctaatgtcgcagaagattacgtgcatcgtattgggagaacaggacgagcaggttca
tcaggtaaggcggtatcattagtttgtgctgatgagttggatgatttaaaagggatagaa
cgattaattcaacaagtactaccaagagaaataattaaaggctttgaacctcaaaatgcc
ttagcaacaacagtattagatacacgtccaattaaaaaaagaccaaagaaaaagaaattt
aaataa
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